PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123491001 | ||||||||
Common Name | GSBRNA2T00123491001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 307aa MW: 35131 Da PI: 7.326 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 91.9 | 4.6e-29 | 21 | 107 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kvlt+sdv+k++rlv+pk++ae++ +++ +++++l ++d++g+ W++++ y+ +s++yv+tkGW +Fvk+++L++gD++ F+++ GSBRNA2T00123491001 21 FDKVLTTSDVGKLNRLVIPKQHAENYfplEEI-QNGTMLDFQDRNGKMWKFRYLYWSSSQSYVMTKGWVRFVKDKNLESGDTISFHRS 107 89*********************999*98444.3678************************************************954 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-35 | 18 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-29 | 19 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-27 | 19 | 107 | No hit | No description |
SMART | SM01019 | 8.8E-22 | 21 | 130 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-26 | 21 | 107 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.254 | 21 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MASGSGNNNN NFNMAMGEHM FDKVLTTSDV GKLNRLVIPK QHAENYFPLE EIQNGTMLDF 60 QDRNGKMWKF RYLYWSSSQS YVMTKGWVRF VKDKNLESGD TISFHRSYVL DDTEPGKRIK 120 KLYVDWRHRA DRNLVHNINH HHHYPLFMPP TYPSAGYYPL SGYSMPHYQR LPPFYHNQFQ 180 ERDFSGYGYG GPDYAGSPWG HHHHYQYGRS EPLVYNSYPV YPTTGVPSSS AILPPHQPPQ 240 EGTAKKLRLF GVDVEESSSS GEARGEMAVA GYSSSSPVVI RDEESSSAMQ LSEDEEYKRK 300 GKSIDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-43 | 14 | 129 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-43 | 14 | 129 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123491001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013610495.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA4 | ||||
Refseq | XP_013610496.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA4 | ||||
Swissprot | O82595 | 1e-132 | NGA4_ARATH; B3 domain-containing transcription factor NGA4 | ||||
TrEMBL | A0A0D3DZU8 | 0.0 | A0A0D3DZU8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g004050.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13651 | 15 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-124 | B3 family protein |
Publications ? help Back to Top | |||
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