PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123489001
Common NameGSBRNA2T00123489001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 289aa    MW: 32737.2 Da    PI: 5.0731
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123489001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.89.9e-4161363128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +GfrF Ptdeel++++Lk+k+ gk+  +++ i+ev i+++eP +Lp+  ++k+++  wyf s+++ k+++++ ++r+t sg+Wk+tgkd+
  GSBRNA2T00123489001   6 VGFRFCPTDEELINYFLKNKILGKPWLVDDKIREVSICSYEPASLPAlsMIKSKDPVWYFLSPKEYKSPKKSLTKRTTPSGFWKSTGKDR 95 
                          7************************999999***************4448888889********************************** PP

                  NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++   +g ++g+kktLv+++g++++++ t W+mhey++
  GSBRNA2T00123489001  96 KVKEEkrrDGIVIGIKKTLVYHEGKSSNAVPTPWIMHEYHI 136
                          ***986656667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.2994155IPR003441NAC domain
PfamPF023651.5E-246136IPR003441NAC domain
SuperFamilySSF1019411.31E-466155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
METSNVGFRF CPTDEELINY FLKNKILGKP WLVDDKIREV SICSYEPASL PALSMIKSKD  60
PVWYFLSPKE YKSPKKSLTK RTTPSGFWKS TGKDRKVKEE KRRDGIVIGI KKTLVYHEGK  120
SSNAVPTPWI MHEYHITCLP LADQSTYVLC KLFYKGNVRD IPSGSNSTKP GHYLVMSDSN  180
TVEATNTPPQ VEQAGQESLS GFSVNDVIML MNEQEDLSPW DTLCPIPNTL FIDNNDNTKV  240
QLQTTCLAQN DDEDLGAFTQ IESLLADHQE FITQENCEEY MLKWSCLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-25715718170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123489001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722780.10.0NAC domain-containing protein 69-like
SwissprotQ9M1265e-93NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A0D3DZV00.0A0A0D3DZV0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D9840.0A0A3P6D984_BRAOL; Uncharacterized protein
STRINGBo9g004070.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.12e-90NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]