PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123485001
Common NameGSBRNA2T00123485001, LOC106426670
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 427aa    MW: 48208.1 Da    PI: 6.6512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.73.2e-3861363128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 
                          +G+rF+Pt ee++++yLk k+ +++  ++e+i+e++i+ ++P+ Lp  +k+++++  wyfF++r+ ++++ +k ++r+t sg+Wkatgkd
  GSBRNA2T00123485001   6 VGYRFSPTGEEVINYYLKSKILDRPWLVNEAINEINICAYDPEFLPslSKLESKDLVWYFFTPREYHASEkKKGTKRTTPSGFWKATGKD 95 
                          7************************999899***************5447777888********9988762667888************* PP

                  NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + + +k  +g  +g+kktLv+++g+a +g+ t Wvmhey+ 
  GSBRNA2T00123485001  96 RIIRDKrgHGVGIGIKKTLVYHHGKAANGVGTPWVMHEYHT 136
                          *****965566699*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.4084154IPR003441NAC domain
SuperFamilySSF1019411.24E-425154IPR003441NAC domain
PfamPF023654.4E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MERNLVGYRF SPTGEEVINY YLKSKILDRP WLVNEAINEI NICAYDPEFL PSLSKLESKD  60
LVWYFFTPRE YHASEKKKGT KRTTPSGFWK ATGKDRIIRD KRGHGVGIGI KKTLVYHHGK  120
AANGVGTPWV MHEYHTTSLP LNQRNYVICQ VMYKGAGGDS LYGNNSNALS HSTLVSDLNT  180
DREINTAPQV EQPWQDLFFS VDDLANPLNE QDDTSLFNPD TLFNDNYCPY QQPQAPSDDD  240
YIDELLSFNG GNYDDVLRDP NITMHRNDHR PKKALTGIIV DCSSDSDVES ISATSYQETS  300
SPDSFHSLSA QFHTSGDEIP SLRKDSCTDI KPPAETSINR KTRKAHLTRR TVKEGESKGV  360
NASVDKKSSS SMVKTEKKGW FITEEAMDRR NRKNPPYIYL MNMIIGFILL VAVIDNIMSI  420
LLSVKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-20715420165NO APICAL MERISTEM PROTEIN
1ut4_B2e-20715420165NO APICAL MERISTEM PROTEIN
1ut7_A2e-20715420165NO APICAL MERISTEM PROTEIN
1ut7_B2e-20715420165NO APICAL MERISTEM PROTEIN
3swm_A2e-20715423168NAC domain-containing protein 19
3swm_B2e-20715423168NAC domain-containing protein 19
3swm_C2e-20715423168NAC domain-containing protein 19
3swm_D2e-20715423168NAC domain-containing protein 19
3swp_A2e-20715423168NAC domain-containing protein 19
3swp_B2e-20715423168NAC domain-containing protein 19
3swp_C2e-20715423168NAC domain-containing protein 19
3swp_D2e-20715423168NAC domain-containing protein 19
4dul_A2e-20715420165NAC domain-containing protein 19
4dul_B2e-20715420165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123485001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4204390.0KJ420439.1 Brassica napus NAC transcription factor 69-1 (NAC69-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013605970.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
RefseqXP_013722846.10.0NAC domain-containing protein 69 isoform X1
SwissprotQ9M1261e-156NAC69_ARATH; NAC domain-containing protein 69
TrEMBLA0A0D3DZV30.0A0A0D3DZV3_BRAOL; Uncharacterized protein
STRINGBo9g004100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-153NAC domain containing protein 69
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]