PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123451001
Common NameGSBRNA2T00123451001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 557aa    MW: 62880.6 Da    PI: 4.9226
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123451001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM652.2e-2081376128
                  NAM   6 rFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatg 87 
                           F+Pt+ el++    + v+gk++++   i+++ ++y+  Pw L+  ++v+ +e+ew++F++r+k+       ++r++r + +sg+Wk++g
  GSBRNA2T00123451001   8 YFKPTNFELLNILHWRLVRGKRCSF---ITDMqNLYERAPWLLQhvRHVRFRENEWFYFVRRNKRPGkqkaDSTRPSRtVGESGIWKTSG 94 
                          6*********998889999999877...777769*********94337777999*******998755222256699996667******** PP

                  NAM  88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             ++++++g++vg+k+ + f   +++ ++g  t W+mhe+ l
  GSBRNA2T00123451001  95 VVAQIKNQDGANVGTKRHISFKanSATVKDGITTGWTMHEFVL 137
                          **********************4334668999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.7263153IPR003441NAC domain
PfamPF023653.3E-98137IPR003441NAC domain
SuperFamilySSF1019415.75E-238152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MKGTGRSYFK PTNFELLNIL HWRLVRGKRC SFITDMQNLY ERAPWLLQHV RHVRFRENEW  60
FYFVRRNKRP GKQKADSTRP SRTVGESGIW KTSGVVAQIK NQDGANVGTK RHISFKANSA  120
TVKDGITTGW TMHEFVLDEP WFQEVVLCRI RFCKRKDNAQ YAPRFLPIVI GRERGDSIHH  180
GVAAAGEELQ YLDAPVETHE AQGMEQWTGS CSREVVSYLS RQQIMVQDSN YTILNGGGMM  240
QHQDFGSYGQ HFSVNGSMEK HQDFGSYGQL SGECLGQQQN HILAGQAIYV SHMEDHQQQR  300
HNLFGGHVTG PSHSAQAMEE EEGEEEQQWN GYFGPYSAQP YDQGMMENQD FGSSALGLAQ  360
NHQCLGQKND LSALSELAAQ QQHLGEGSKL SGPSQVPVMM NQALDQEEHH VPWSAQPNDQ  420
YKGQNNDLPT VPMETQQQQH ENVIINSAVQ LHLEAQDNVP LINESMEAQA TDLPVNQGID  480
ASHGGIVGSL TYSELYQEFL GEEEMGSEMD NIWNDFLNEE WVQKLGKNTP EEEAELMADL  540
TNCETFESFL DSLLPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123451001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607456.10.0PREDICTED: uncharacterized protein LOC106314055
TrEMBLA0A3P6E5C70.0A0A3P6E5C7_BRAOL; Uncharacterized protein
STRINGBra036304.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-13NAC family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]