PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123419001 | ||||||||
Common Name | GSBRNA2T00123419001, LOC106347585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 28319 Da PI: 8.1409 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv +k+ G g+W++ +++ g+ R++k+c++rw +yl GSBRNA2T00123419001 25 RGPWTAEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 79 | 123 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g T++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSBRNA2T00123419001 79 GGITPDEEDLIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 667******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 16 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.631 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 21 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 25.197 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 76 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 79 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-12 | 82 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MTSSRGKKQV VKKMIPCCMK MGMKRGPWTA EEDEILVSFI KKEGEGRWRS LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGG ITPDEEDLII RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLRKKLLSE GIDPQTHKPL DAKNAHHKPG EEVSGGQNLL EPNSSSHTDD TTVNSGNEAT 180 KITFSVFGGE DNEDFGFCYD DKFSSFLNAL INDDPFDSNI PLSQPFRTQD CTGEIVGTSS 240 SLEHGQRIED I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 23 | 127 | 5 | 108 | B-MYB |
1h8a_C | 6e-27 | 23 | 127 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123419001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013642609.1 | 0.0 | transcription repressor MYB5 | ||||
Swissprot | Q38850 | 1e-136 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A398AUG2 | 0.0 | A0A398AUG2_BRACM; Uncharacterized protein | ||||
STRING | Bra039395.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-138 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 106347585 |
Publications ? help Back to Top | |||
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