PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123385001
Common NameGSBRNA2T00123385001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 254aa    MW: 28029.4 Da    PI: 7.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123385001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-1365111354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+h  +E+rRRdriNs ++ Lr+l+P++      Kl+Ka+ L  ++e +k+L
  GSBRNA2T00123385001  65 RSHRLAEKRRRDRINSHLSALRKLVPNS-----DKLDKAALLATVIEQVKEL 111
                          68*************************8.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.13562111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-1265113No hitNo description
SuperFamilySSF474591.57E-1365118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1065111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1465126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1168117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00103146221No hitNo description
Gene3DG3DSA:3.30.70.2608.9E-4152202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENSYESAAK WSDSNSPYNM LSCSLLQSDS DLSRFNLGFS SSSSSGNFPS DEFVGGIEKG  60
ELLSRSHRLA EKRRRDRINS HLSALRKLVP NSDKLDKAAL LATVIEQVKE LKQTATQSPT  120
SQELPTEADE VTVQPETISN DFEPDTIIFK ASFCCEDQPE AISEIIRVLT KFQLETLQAE  180
IICVGGRLRI NFILKDSNCK DTTTNSVSSA KALKQSLCAA LNRIASSSSS STSSVSRIRS  240
KRQRWFLSSH YSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.97050.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123385001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744811.10.0transcription factor bHLH51-like
SwissprotQ9XEF01e-133BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A397ZQ380.0A0A397ZQ38_BRACM; Uncharacterized protein
STRINGBra017024.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]