PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123250001
Common NameGSBRNA2T00123250001, LOC106431112
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 277aa    MW: 31021.2 Da    PI: 7.7052
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.26.7e-17206251551
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                          ++++r++kNRe+A+rsR+RK+a+++eLe kv +Le+eN++L+ +l e
  GSBRNA2T00123250001 206 RKQKRMIKNRESASRSRARKQAYTQELEIKVSSLEEENQKLR-RLME 251
                          689**************************************9.5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000413.6E-5129144IPR001630cAMP response element binding (CREB) protein
PRINTSPR000413.6E-5201217IPR001630cAMP response element binding (CREB) protein
SMARTSM003384.6E-9201258IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.22204251IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-14206248No hitNo description
PfamPF001708.2E-14206248IPR004827Basic-leucine zipper domain
CDDcd147071.90E-20206251No hitNo description
SuperFamilySSF579596.88E-11206250No hitNo description
PROSITE patternPS000360209224IPR004827Basic-leucine zipper domain
PRINTSPR000413.6E-5219239IPR001630cAMP response element binding (CREB) protein
PRINTSPR000413.6E-5239256IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGSLRGDMEE PIHQSLPRGN SLYSLKLHEV QTHLGSSSKP LGSMNLDELL KSVLSAEANH  60
PPEEGTEDGI TRQGSLTLPR GLSRKTVNDV WRDIQHDENG CSSNPNKQPT LGEITLEDLL  120
MKAGVVTETM TVPQNVVNVA SNGQWAQYHQ PQQQLQGFMP YPVCDMQEMV PPTALMMSGL  180
SETQQVHGRK RVASSGGEFV ERIVERKQKR MIKNRESASR SRARKQAYTQ ELEIKVSSLE  240
EENQKLRRLM EVEKILPSEP PPEPKWKLRR TSSASF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123250001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3342096e-81AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBankAJ4208816e-81AJ420881.1 Arabidopsis thaliana partial mRNA for basic leucine zipper transcription factor (atbzip12 gene).
GenBankAY0846686e-81AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBankBT0251756e-81BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727377.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 3
RefseqXP_013727378.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q21e-135AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A397ZQB40.0A0A397ZQB4_BRACM; Uncharacterized protein
STRINGBra016953.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-137bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  4. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]