PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123125001
Common NameGSBRNA2T00123125001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 1409aa    MW: 155076 Da    PI: 6.8395
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123125001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.33.4e-14953992141
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++kk+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  GSBRNA2T00123125001 953 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVD 992
                          589**************************.********986 PP
2TCR49.68e-1610381076139
                  TCR    1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39  
                           k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN 
  GSBRNA2T00123125001 1038 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNF 1076
                           589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.208.5E-217124No hitNo description
SuperFamilySSF561123.52E-718181IPR011009Protein kinase-like domain
PfamPF000693.3E-2921201IPR000719Protein kinase domain
PROSITE profilePS5001137.71421417IPR000719Protein kinase domain
SMARTSM002205.4E-7221417IPR000719Protein kinase domain
PROSITE patternPS0010702750IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.102.7E-48125180No hitNo description
PROSITE patternPS001080144156IPR008271Serine/threonine-protein kinase, active site
PfamPF000691.6E-19268417IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.7E-48290418No hitNo description
SuperFamilySSF561123.52E-71291434IPR011009Protein kinase-like domain
SuperFamilySSF902094.47E-10642681IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:4.10.1060.102.8E-13645679IPR001876Zinc finger, RanBP2-type
PROSITE profilePS501999.371650681IPR001876Zinc finger, RanBP2-type
SMARTSM005474.6E-5652678IPR001876Zinc finger, RanBP2-type
PROSITE patternPS013580654675IPR001876Zinc finger, RanBP2-type
SMARTSM011142.0E-16953993IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.1369541078IPR005172CRC domain
PfamPF036382.0E-10955990IPR005172CRC domain
SMARTSM011145.3E-1910381079IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-1210411076IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1409 aa     Download sequence    Send to blast
MDKQPASSWS IHTRPEIIAK YEIFERVGSG AYADVYRARR ISDGLTVALK EIFDYQSAFR  60
EIDALSILHG SPNVVLMHEY FWREDENAVI VLEFLRSDLA AVIRDAKRRK KKGEGGGDGF  120
SVGEIKRWMV QILNGVDACH RNMIVHRDLK PGNMLIGDDG VLKLADFGQA RILMESDNLA  180
TDENQQEERE GEASREPPEV IPDYVNSSQK GSEGQEQEVL SRDEYFRQVE ELKAKQVLRD  240
DTDKDSNVPD GDGASCLATC TVSEMDDDFG TNSFTYDEGL DGGGEGLMTS CVGTRWFRPP  300
ELLYGSTMYG LEIDLWSLGC VFAELLSLEP LFPGVSDIDQ ISRVTNVLGN LNEEVWPGCV  360
DLPDYKSISF AEVESPLGVE GCLPNHSGEV IALLKKLICY DPARRATAVE MLSDKYFKEE  420
PLPVPVSELY VPPAMSGPDE EDSPRKWNDY REMDSDSDGF GPVNVKPTNG LDCTCLGAMI  480
ENLDHPESVC CVKIVLRILV VIHVREDRTP QHHPPHISSL VVRPSGSNDG EGDRHAVAGD  540
DSRDRPSFAR SDRHKSDNGH RTRASSSSPP PRRPFEDHHR HGSDLNYSGV PLRGGRDFSS  600
RRESSGRYRD YSPPHARVGR RFDGPEPTHG RPFKSDGFGR NNNHPKVQPR DGDWYCLDPL  660
CSNLNFARRE VCFKCKRRRY APANTPPPPR LLPPPVNLSP RRDFNGYRSP PRGYPRDYPP  720
PRLDHPTWRD RDREGGDRLR YSNLEYPPNR RLASDWVPEP HYERRPPLSP PRGGGWGRHS  780
RERSRSPPMR DNPPPPPMRD YRRDSYLERG GRDDQRGNFL GSFGDSKILE MGEEGGGGGG  840
GGGGFPPKKE GVTDESGFPA KTPARQLDFT GGSAEHSLSP TVVATAVKTI VTSSVSSSPI  900
TTMASRLHPV VRPTVTNPPS QSPILNAPIR HPKPESPISR PRPIVEGRDG TPQKKKQCNC  960
KHSRCLKLYC ECFASGTYCD GCNCVNCFNN VDNEPARRDA VEATLERNPN AFRPKIASSP  1020
HGVRDKREEI GEVVLLGKHN KGCHCKKSGC LKKYCECFQA NILCSENCRC LDCKNFDGSE  1080
ERQALFHGEH ANNMAYLQQA ANAAITGAVG SSGFAPSPAP KRRKGHDISF NQATKDSSSH  1140
RLGQFQQANN GRSSGPTSGT SPATVSRPGG TSSAAPSKFV YRSLLADIIQ PQDVKALCSV  1200
LVAVAGEAAK TLTDKRNETE TCLASSAQDN SQGNKDVEMV AADGNQADKS EPEGSNSDAS  1260
KGKPLSPATL ALMCDEQDTI FMVAAAEPNG SVDPGGCGTN SQEKSEIYAE KERVVLTKFR  1320
DCLSRLISYA EIKESKCSYL ARRHIQPPPT ASATVKTENG IQQIPQPPTT AQPTLTKPQP  1380
LQPTTTTNTS TTQHPHKPPA LPEKKDSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-30955108711132Protein lin-54 homolog
5fd3_B6e-30955108711132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.173110.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123125001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P6EUB50.0A0A3P6EUB5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g016960.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.10.0Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]