PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122356001
Common NameGSBRNA2T00122356001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 335aa    MW: 37792.5 Da    PI: 7.1434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122356001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05174193120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00122356001 174 FSCPLCYKTFNRYNNMQMHM 193
                          89*****************9 PP
2zf-C2H213.10.0003258280123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C  Cgk F  k + ++H +++
  GSBRNA2T00122356001 258 FACRRCGKAFAVKGDWRTHEKNC 280
                          78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.48E-5169197No hitNo description
PROSITE profilePS5015710.201174201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576672.9E-6244278No hitNo description
Gene3DG3DSA:3.30.160.608.6E-6244278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767258278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSDPACIFNN GIVDGYDYSF NYSTSLSHIY NSNGSFYYPH NTTDINPNST LPESPPLREA  60
LPLLSLSPIH KQQEDIVPQH EYCFMETTEN SSNSNFLNHN LDQCQESTHH YDVTVDLHLG  120
LPNPGGDAIA AAAMSSLILP TKSIIKIVIN IMEGSHNHYW IPTPSQILMG PTQFSCPLCY  180
KTFNRYNNMQ MHMWGHGSEY RKGPESLRGT QPTGMLKLPC YCCAPGCKNN IEHPRARPLK  240
DFRTLQTHYK RKHGARPFAC RRCGKAFAVK GDWRTHEKNC GRLWYCSCGS DFKHKRSLKD  300
HVKAFGNGHV PCFGIDCFGD HEDEEAASDV EQQE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.146000.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122356001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585320.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0301e-180ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A3P6F0G30.0A0A3P6F0G3_BRAOL; Uncharacterized protein
STRINGBo5g105140.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.11e-177WIP domain protein 4
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]