PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00122235001

Common Name

GSBRNA2T00122235001, LOC106420023

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 485aa MW: 53915.7 Da PI: 7.5208

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00122235001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.5	3.8e-10	180	221	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L GSBRNA2T00122235001 180 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 221 5889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.7E-7	177	254	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	179	223	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-7	180	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.0E-8	180	224	No hit	No description
SuperFamily	SSF57959	6.25E-7	181	223	No hit	No description
CDD	cd14708	5.47E-23	181	233	No hit	No description
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-29	262	337	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDNHRVISEA TNHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSCFDYGEL EEAMVLQGVN 60 SSSHEAKPRL FAGGGATTLE MFPSWPIRTH KSLPTESSKS GGESSDSESA NFSGKAESQL 120 PESPMSSKQN HHLMLQHHHS NNMANSTSAS GLPSTSRTLA PPKASEDKRK ATTSGKLLDA 180 KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE LQRARSQGMF MGGCGPPGPN 240 ITSGAAMFDM EYGRWLEDEN RHMSEIRTGL QAHLSDNDLR LIVDGYIAHF DEVFRLKAVA 300 AKADVFHLII GTWMSPAERC FIWMAGFRPS DFIKILVSQM DLLTEQQLMG IYSLQHSSQQ 360 AEEALSQGLE QLQQSLIDTL AASQVIDGMQ QMAVALGKVS NLEGFIRQAD NLRQQTVHQL 420 RRILTVRQAA RCFLVIGEYY GRLRALSSLW LSRPRETLIS DETSCQTTTD LQMVQSSRNQ 480 FSNF*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDNHRVISEA TNHNDNHHLS YSLLHGLSNN PPPPGFINQD GSSCFDYGEL EEAMVLQGVN  60
SSSHEAKPRL FAGGGATTLE MFPSWPIRTH KSLPTESSKS GGESSDSESA NFSGKAESQL  120
PESPMSSKQN HHLMLQHHHS NNMANSTSAS GLPSTSRTLA PPKASEDKRK ATTSGKLLDA  180
KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE LQRARSQGMF MGGCGPPGPN  240
ITSGAAMFDM EYGRWLEDEN RHMSEIRTGL QAHLSDNDLR LIVDGYIAHF DEVFRLKAVA  300
AKADVFHLII GTWMSPAERC FIWMAGFRPS DFIKILVSQM DLLTEQQLMG IYSLQHSSQQ  360
AEEALSQGLE QLQQSLIDTL AASQVIDGMQ QMAVALGKVS NLEGFIRQAD NLRQQTVHQL  420
RRILTVRQAA RCFLVIGEYY GRLRALSSLW LSRPRETLIS DETSCQTTTD LQMVQSSRNQ  480
FSNF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24715	0.0	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00122235001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022547307.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A0D3DYF6	0.0	A0A0D3DYF6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FMH3	0.0	A0A3P6FMH3_BRAOL; Uncharacterized protein
STRING	Bo8g112540.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	106420023

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]