PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00122214001 | ||||||||
Common Name | GSBRNA2T00122214001, LOC106420010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 182aa MW: 20346.9 Da PI: 9.6277 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.3 | 2.2e-15 | 76 | 163 | 12 | 99 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++d k ++P+ ri++i+++d+ +i +a l+ ka elfi ++ ++ + + k++ ++ ++++v++++ ++fl d vp++ GSBRNA2T00122214001 76 GVEDAKMIRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATELFIERFSGEAYESSVQDKKKFIHYKHLSSVVSNSERYEFLADCVPEK 163 56789999*****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 8.2E-22 | 84 | 147 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.8E-24 | 85 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.26E-18 | 94 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVSSKKPNQE KKPKSDGVNK AAARNARSSG SKSKKKSNVQ ANVKKEPEVH EISESSSSDS 60 VEETRRDEPM KSNGGGVEDA KMIRFPMNRI RRIMRSDNSA PQIMQDAVFL VNKATELFIE 120 RFSGEAYESS VQDKKKFIHY KHLSSVVSNS ERYEFLADCV PEKVKAEVAL EEWEKSMTDA 180 G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15749 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00122214001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797146 | 1e-154 | KC797146.1 Brassica napus transcription factor subunit NF-YC10A (NF-YC10A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013716301.1 | 1e-130 | chromatin accessibility complex protein 1 | ||||
TrEMBL | A0A397Y7S3 | 1e-128 | A0A397Y7S3_BRACM; Uncharacterized protein | ||||
STRING | Bra031606.1-P | 1e-108 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-66 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Entrez Gene | 106420010 |
Publications ? help Back to Top | |||
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