PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00122062001
Common NameGSBRNA2T00122062001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 721aa    MW: 79485.8 Da    PI: 5.6287
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00122062001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  GSBRNA2T00122062001  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                          688999************************************************995 PP
2START216.58.9e-682544672206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                          la +a++el+++++++ep+W +++   +++e+ ++f+++ +     +++ea+r+s+vv+m++ + ve+l+d++ qW+  +a    +a+tl
  GSBRNA2T00122062001 254 LAVAAMEELIRMVQVDEPLWNSLV--FDEEEYARTFPRGIGpkpagFRSEASRESVVVIMNHINIVEILMDVN-QWSMVFAgmvsRAMTL 340
                          6789********************..************999********************************.**************** PP

                          EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
                START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                          +v+s+g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvt
  GSBRNA2T00122062001 341 AVLSTGvagnynGALQVMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVT 426
                          **************************************************************8....*********************** PP

                          EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          wvehv++++r +h l++++v++g+a+gak+wva l+rqce+
  GSBRNA2T00122062001 427 WVEHVEVDDRGVHDLYKHMVSTGHAFGAKRWVAILDRQCER 467
                          ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-2145122IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1955124IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.6E-1865128IPR001356Homeobox domain
CDDcd000867.94E-1967125No hitNo description
PfamPF000463.2E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084842.001244470IPR002913START domain
SuperFamilySSF559613.46E-33245469No hitNo description
CDDcd088753.89E-122248466No hitNo description
SMARTSM002341.5E-61253467IPR002913START domain
PfamPF018525.0E-60254467IPR002913START domain
Gene3DG3DSA:3.30.530.207.2E-5346433IPR023393START-like domain
SuperFamilySSF559616.6E-25486712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHN YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA  180
RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNFGGDVYG NNPTDQFKCI  240
TAPTESDKPV IIDLAVAAME ELIRMVQVDE PLWNSLVFDE EEYARTFPRG IGPKPAGFRS  300
EASRESVVVI MNHINIVEIL MDVNQWSMVF AGMVSRAMTL AVLSTGVAGN YNGALQVMTA  360
EFQVPTPLVP TRETYFARYC KQQADGSWAV VDISLDSLQP NPPVRCRRRA SGCLIQEMPN  420
GYSKVTWVEH VEVDDRGVHD LYKHMVSTGH AFGAKRWVAI LDRQCERLAS VMATNISSGE  480
VGVITNQEGR RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR  540
PPGIVLSAAT SFGIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRETGNCVS  600
LLRVNSANSS QSNMLILQES CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI  660
LPDGNANGRG EGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKASMSCETA  720
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99871e-152seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00122062001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013664795.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_013664796.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_013664797.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_013664798.10.0homeobox-leucine zipper protein HDG2-like
RefseqXP_013664800.10.0homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLM4EUJ60.0M4EUJ6_BRARP; Uncharacterized protein
STRINGBra032478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]