PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121959001
Common NameGSBRNA2T00121959001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 271aa    MW: 30529.3 Da    PI: 5.5284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121959001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-202676155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a++kl+g
  GSBRNA2T00121959001 26 CRYRGVRQRT-WGKWVAEIREPKK---RARLWLGSFATAEEAAMAYDEAALKLYG 76
                         78*****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-322686No hitNo description
PfamPF008472.8E-142676IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302785IPR001471AP2/ERF domain
PROSITE profilePS5103223.3542784IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212785IPR016177DNA-binding domain
SMARTSM003801.2E-372790IPR001471AP2/ERF domain
PRINTSPR003673.1E-102839IPR001471AP2/ERF domain
PRINTSPR003673.1E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEKPSSMKQW KKGPARGKGG PQNALCRYRG VRQRTWGKWV AEIREPKKRA RLWLGSFATA  60
EEAAMAYDEA ALKLYGPEAY LNLPHLQQRK QQGPPLNNTQ RFKWVPSKKF ISMFPSRGLL  120
NVNAQPSVQV IQQRLDELKR NGLLSQSYSS SSSSTESKSL LDEKTSKDKV LEGDGDKEKP  180
EIDLNEFLQQ MGILKDKSQP EASQVAESHL TPPWNEQEEG GSPFTAQSLS WETMIEMPGS  240
ETSAMQFDFD FEDDDLGFSS IWNFCGSLDE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-182884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121959001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894570.0AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659898.10.0dehydration-responsive element-binding protein 2F-like
RefseqXP_022547552.10.0dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-135DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A397Y1800.0A0A397Y180_BRACM; Uncharacterized protein
STRINGBra007341.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81682638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.11e-115ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]