PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121951001
Common NameGSBRNA2T00121951001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 375aa    MW: 42146.9 Da    PI: 6.9704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121951001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05209228120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  GSBRNA2T00121951001 209 FSCPVCFKTFNRYNNMQMHM 228
                          89*****************9 PP
2zf-C2H215.16.6e-05293315123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk+F  + + ++H +++
  GSBRNA2T00121951001 293 FMCRKCGKVFAVRGDWRTHEKNC 315
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38209231IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-6209228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64209236IPR007087Zinc finger, C2H2
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
SuperFamilySSF576672.59E-6275313No hitNo description
Gene3DG3DSA:3.30.160.606.1E-5280313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537293313IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTDPYSNFFT GWFKSNPFHH YPNSSTSPSP PPPHSSFFFP HSGDLHRPPP APTPPPSPPL  60
REALPLLSLS PANKQQHHHD HQIQEPPSIS MDVDYDHHHH QDDHNLDDHD HDVTVALHIG  120
LPSPSPQDMA SLLMMSSSSS SSRPTTHYLE DMNGKKDLDN DYHQGGVGGG EDDDEDSVGG  180
DGGCRISRLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  240
SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK  300
VFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHGAYGID GFDEEDEPAS  360
EVEQLDNDHE SISK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121951001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516391.10.0PREDICTED: zinc finger protein WIP2-like isoform X1
RefseqXP_010516392.10.0PREDICTED: zinc finger protein WIP2-like isoform X2
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A397Y9Q90.0A0A397Y9Q9_BRACM; Uncharacterized protein
STRINGBra007346.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-167C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]