PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121681001
Common NameGSBRNA2T00121681001, LOC106436297
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 259aa    MW: 29366.8 Da    PI: 7.5353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121681001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEde+l   v ++G  +W+tI+   g+ R +k+c++rw +yl
  GSBRNA2T00121681001 19 KGLWSPEEDEKLRSHVLKYGHVCWSTIPIQAGLQRNGKSCRLRWVNYL 66
                         678*****************99************************97 PP
2Myb_DNA-binding51.91.7e-1672117148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          + ++T+eE+  l+ ++  lG++ W+ I+++++ gRt++++k++w++yl
  GSBRNA2T00121681001  72 KSAFTKEEETTLLSLHSILGNK-WAHISKYLP-GRTDNEIKNYWHSYL 117
                          578*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6791466IPR017930Myb domain
SuperFamilySSF466894.77E-2916113IPR009057Homeodomain-like
SMARTSM007171.3E-101868IPR001005SANT/Myb domain
PfamPF002491.9E-121966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-222073IPR009057Homeodomain-like
CDDcd001671.41E-92266No hitNo description
PROSITE profilePS5129425.37367121IPR017930Myb domain
SMARTSM007178.3E-1671119IPR001005SANT/Myb domain
PfamPF002491.9E-1572117IPR001005SANT/Myb domain
CDDcd001671.01E-1174117No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2474121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVCKSETSNR KLNKVRQSKG LWSPEEDEKL RSHVLKYGHV CWSTIPIQAG LQRNGKSCRL  60
RWVNYLRPGL KKSAFTKEEE TTLLSLHSIL GNKWAHISKY LPGRTDNEIK NYWHSYLKKS  120
VVPSRKDETT RTPQTHSVAN SLEAFESTSE RSSSCSNFGD SFRAKVSNFS PSLVFSEWLD  180
DSLVMDQSPQ KYSYVQDHIV PQQSGFVETF SQGFYENNNS LDNFIPNSGF SLEGDIEFCT  240
SFSDSFLVDA LVSEQGSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26191217108B-MYB
1h8a_C1e-261812126128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121681001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732706.10.0transcription factor LAF1
SwissprotQ9M0K45e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0D3DRH70.0A0A0D3DRH7_BRAOL; Uncharacterized protein
STRINGBo8g077360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.11e-116myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]