PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121514001
Common NameGSBRNA2T00121514001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 670aa    MW: 73512.8 Da    PI: 7.0858
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121514001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094574941954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00121514001 457 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 494
                          664559******************************88 PP
2BELL122.12.4e-39315386172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  GSBRNA2T00121514001 315 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFDIVMGHGAAIPYTALAQKAMSRHFRCLKDAVAAQL 386
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-78241384IPR006563POX domain
PfamPF075267.3E-52246383IPR006563POX domain
PROSITE profilePS5007112.568435498IPR001356Homeobox domain
CDDcd000863.90E-12438499No hitNo description
SMARTSM003891.2E-9438502IPR001356Homeobox domain
SuperFamilySSF466892.95E-17439505IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-29441504IPR009057Homeodomain-like
PfamPF059203.3E-18455494IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MSQDYHHQQH QGGFFSSSNG FNRSDSPNLT HQEKQEHQRV LEMDEESSVA RSGIPVYEPA  60
GMLSEMFNFQ RSSGGGGGGG GDFDHSQSFR SNRQLLEQQH HNIPAMNSAA GMQLFLPQQP  120
PSTRSHHGSS TLHMLLPNPS HHQGYPNTMS MHQLPHQQLT WQSSPDHHHN TQTDIGTVHV  180
ENSGGGQGLS LSLSSSLEAA VKAEEYRKFY YGSNLSSHHQ YNEVSNHFLS SPAAASSSSS  240
IGAINILRNS KYTKAAQELL EEFCSVGRGF SKKNKPKNKS NPNTSGGDGS SSGGAGGSPS  300
SAGASKEHPP LSASDRIEHQ RRKVKLLTML EEVDRRYNHY CEQMQMVVNS FDIVMGHGAA  360
IPYTALAQKA MSRHFRCLKD AVAAQLRQSC ELLGEKDAAG LSSSGLTKGD TPRLRLLEQS  420
LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK HLLARQTGLS  480
RNQVSNWFIN ARVRLWKPMV EEMYQQESKE REERLEENEQ EDQETKNNSS NDKSTKPNNN  540
ESNFTAVRTT SQTPTTAAQS AATPPDAGHH RLRSAADINA YENDPSSSSH SNAAAVVSSY  600
GGSTAFSAIA TCQQGVGGFA DADMDGDNNV IRFGTINPTG DVSLTLGLRH AGNIPDKNAS  660
FCVRDFGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16444502563Homeobox protein Meis2
3k2a_B1e-16444502563Homeobox protein Meis2
4xrs_A9e-17444501158Homeobox protein Meis1
4xrs_B9e-17444501158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121514001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141155.10.0PREDICTED: BEL1-like homeodomain protein 2
RefseqXP_009141221.10.0PREDICTED: BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A398AHI50.0A0A398AHI5_BRACM; Uncharacterized protein
STRINGBo1g005330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]