PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00121412001 | ||||||||
Common Name | GSBRNA2T00121412001, LOC106346248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Nin-like | ||||||||
Protein Properties | Length: 327aa MW: 37781.5 Da PI: 10.1261 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.3 | 9.6e-26 | 197 | 245 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl GSBRNA2T00121412001 197 GLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKIKSL 245 5779*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.099 | 180 | 265 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-21 | 198 | 245 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAHSLTSLAI FQGVNHKEMI RSLHVYGSVE IEREFLFERK GRYVEKKAKP LFCSEGLQRP 60 EISLGLVFGT WRCIFLFRSN HSLPQFPTLL CPSRNPKLVD IPNLANVLKF ISELKPKKPY 120 FDQPKQLDLV VKEDRVGYGE VDQAKPQRFA LKQDLNRLPD SESESEESED DQNEHSESDA 180 KTEILKKRRT PSQHVAGLCL EDLSKYFGVP IVEASRKLNV GLTVLKKKCR EFGIPRWPHR 240 KIKSLDSLIH DLQEEAEKQQ EKNKAAAMVV AKKQKKLEKE MRNIVERPFM EIQIETKRFR 300 QDNFKKRHRA SRAKKNQESL ATSSST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00121412001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 2e-75 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 2e-75 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 2e-75 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013641009.1 | 0.0 | protein RKD5 | ||||
Swissprot | O81791 | 1e-167 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A398AQ17 | 0.0 | A0A398AQ17_BRACM; Uncharacterized protein | ||||
TrEMBL | M4D569 | 0.0 | M4D569_BRARP; Uncharacterized protein | ||||
STRING | Bra011626.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-138 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106346248 |
Publications ? help Back to Top | |||
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