PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00121384001

Common Name

GSBRNA2T00121384001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 890aa MW: 98905.6 Da PI: 7.2549

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00121384001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.8e-29	567	617	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSBRNA2T00121384001 567 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 617 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	0.001	371	464	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.041	556	637	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-24	570	617	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.3E-23	781	873	No hit	No description
PROSITE profile	PS51745	28.375	786	871	IPR000270	PB1 domain
SMART	SM00666	5.0E-27	786	871	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.9E-22	786	870	No hit	No description
CDD	cd06407	1.77E-39	788	870	No hit	No description
Pfam	PF00564	6.9E-18	788	870	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MDMDFMEELF FDGCWLETTD GKSLKQTTGQ QAPNSINMND NNNSSFLYGY QYAENPSPDH 60 ISNGDTGRKF PPGFLKMEDL TNQPMTQVPF DQSAAMSSAQ AEKFLLEETE RGRRYWIPPR 120 TSQGPSSSVK DRLFQAINGL KVQDKDFLIQ IWLPIQQEGK NFLTTLEQPH FFNPKYKSLK 180 RYRDVSVSYN FLADEDSKES VGLPGRVFLG KLPEWTPDVR FFRSEEYPRI KEAQRCDVRG 240 SLALPVFESG SGICLGVVEI VTTTQKMNYR PELENICKAL EAVNLRSSAN MKSPSSEFLQ 300 VYKQFYCAVI PEVSVFLTSV CRSYDLPLAL TWAPCARQGR GGSRHSDENF SECVSTLDSA 360 CFVLDQQSHN FQEACSEHHL LQGEGIVGKA FKATKLFFVP EVTTFSKTNY PLAHHAKISG 420 LHAALAVPLK NKFNGSVEFV LEFFFPKNCL DTEAQQEMLK SLSVTLQNDF RSLNLVIDKE 480 MELEVVFPVR EELLFSGNAE TGESLKPLPL EEISHEDSSW ISHMINANEK GKGVLDIDPS 540 FDSASFGVGQ TLLGSRRPGE KRRTKTEKTI GLEVLRQYFA GSLKDAAKSI GVCPTTLKRI 600 CRQHGITRWP SRKIKKVGHS LKKLQLVIDS VQGVQGSIQL DSFYTSFPEL SSPNNVSSTG 660 TGTSFKNNDQ PSHLNPQTEN GVSPAVAPTS SPPSSSCSHS SGSSTCCSTG ANQSTNTANT 720 SNTISTRMAE NAGAILKRAR SEVRLRTVNQ EETKSLSRTL SHRAFSEHPL LSNLPRSKSL 780 KAVGGASKVK ATFGEAKVRF TFLPTWGFRE LQHEIARRFN IDNNIIATFD LKYLDDDKEW 840 VLLTCEADLE ECIDIYRSSH SRTIKISVHE ASQAKLGGSF GSTGPVPLP*

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MDMDFMEELF FDGCWLETTD GKSLKQTTGQ QAPNSINMND NNNSSFLYGY QYAENPSPDH  60
ISNGDTGRKF PPGFLKMEDL TNQPMTQVPF DQSAAMSSAQ AEKFLLEETE RGRRYWIPPR  120
TSQGPSSSVK DRLFQAINGL KVQDKDFLIQ IWLPIQQEGK NFLTTLEQPH FFNPKYKSLK  180
RYRDVSVSYN FLADEDSKES VGLPGRVFLG KLPEWTPDVR FFRSEEYPRI KEAQRCDVRG  240
SLALPVFESG SGICLGVVEI VTTTQKMNYR PELENICKAL EAVNLRSSAN MKSPSSEFLQ  300
VYKQFYCAVI PEVSVFLTSV CRSYDLPLAL TWAPCARQGR GGSRHSDENF SECVSTLDSA  360
CFVLDQQSHN FQEACSEHHL LQGEGIVGKA FKATKLFFVP EVTTFSKTNY PLAHHAKISG  420
LHAALAVPLK NKFNGSVEFV LEFFFPKNCL DTEAQQEMLK SLSVTLQNDF RSLNLVIDKE  480
MELEVVFPVR EELLFSGNAE TGESLKPLPL EEISHEDSSW ISHMINANEK GKGVLDIDPS  540
FDSASFGVGQ TLLGSRRPGE KRRTKTEKTI GLEVLRQYFA GSLKDAAKSI GVCPTTLKRI  600
CRQHGITRWP SRKIKKVGHS LKKLQLVIDS VQGVQGSIQL DSFYTSFPEL SSPNNVSSTG  660
TGTSFKNNDQ PSHLNPQTEN GVSPAVAPTS SPPSSSCSHS SGSSTCCSTG ANQSTNTANT  720
SNTISTRMAE NAGAILKRAR SEVRLRTVNQ EETKSLSRTL SHRAFSEHPL LSNLPRSKSL  780
KAVGGASKVK ATFGEAKVRF TFLPTWGFRE LQHEIARRFN IDNNIIATFD LKYLDDDKEW  840
VLLTCEADLE ECIDIYRSSH SRTIKISVHE ASQAKLGGSF GSTGPVPLP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00121384001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013751581.1	0.0	protein NLP2-like
Refseq	XP_022544635.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A398AQ48	0.0	A0A398AQ48_BRACM; Uncharacterized protein
STRING	Bra011600.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]