PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121189001
Common NameGSBRNA2T00121189001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 467aa    MW: 53058.9 Da    PI: 7.0237
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121189001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-083794171854
                          HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +F++  ++yp+ +e+  LA + gLt +qV++WF N R +
  GSBRNA2T00121189001 379 MFQNflHPYPKDSEKHLLAIRSGLTRSQVSNWFINARVR 417
                          5887779******************************88 PP
2BELL92.25.1e-30254324172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r++l++kk++Ll+ll++Vd+rY+++v++++tv+s+F+a+a+l++ +++t++Al+++S+ +++L+++i+++i
  GSBRNA2T00121189001 254 QRRALEAKKTHLLDLLQMVDDRYSHCVDEIHTVVSAFHAAAELDP-QLHTRFALQTVSFLYKNLRERISKKI 324
                          6899*****************************************.***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-45186322IPR006563POX domain
PfamPF075262.2E-27191321IPR006563POX domain
PROSITE profilePS5007110.981358421IPR001356Homeobox domain
CDDcd000867.49E-10361422No hitNo description
SMARTSM003891.1E-4361425IPR001356Homeobox domain
SuperFamilySSF466898.13E-15362429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-25364427IPR009057Homeodomain-like
PfamPF059201.5E-14378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDNINTYSSL DNVITNQNHL LMDLIPSRED STSFPTMLPW NSIRQDPLQM GGFDIFNSFL  60
TNKYLSSTSR STNVHETSFE AMAPPLPPPS LHPMEHLRPY DDPSNNMWSL GENSEFHAYP  120
FIEGVVGPSE PIISTFGEEG FPRNELSLSL ATDVSNESSE ISLCAATKST RITSEQASSS  180
SKHVSKNVSQ VIFGSKYLHS VQEILSHFAT YSLNGIETNP QCYFSSRGTE SEGTNSAFVS  240
CYENLNEFLD GGSQRRALEA KKTHLLDLLQ MVDDRYSHCV DEIHTVVSAF HAAAELDPQL  300
HTRFALQTVS FLYKNLRERI SKKILMMGTV LERGKEKSQE DSIFHQHCLL QQLKRKNHQI  360
WRPQRGLPEK SVSVLRTWMF QNFLHPYPKD SEKHLLAIRS GLTRSQVSNW FINARVRLWK  420
PMIEDMYAEM NKRKLSNTPL QGGNGGSFIR VPKSVMMSQE RDKIRE*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}.
UniprotTISSUE SPECIFICITY: Most abundant in flowers.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121189001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721740.0AY072174.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankAY0965130.0AY096513.1 Arabidopsis thaliana putative homeobox gene ATH1 protein (At4g32980) mRNA, complete cds.
GenBankX801260.0X80126.1 A.thaliana AtH1 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125187.10.0PREDICTED: homeobox protein ATH1
RefseqXP_009125194.10.0PREDICTED: homeobox protein ATH1
SwissprotP487310.0ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A3P5ZMB20.0A0A3P5ZMB2_BRACM; Uncharacterized protein
TrEMBLM4D4J90.0M4D4J9_BRARP; Uncharacterized protein
STRINGBra011403.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.10.0homeobox gene 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]