PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120974001
Common NameGSBRNA2T00120974001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 221aa    MW: 24437.3 Da    PI: 8.9885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120974001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1865115255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAa+ +++a+ kl+g
  GSBRNA2T00120974001  65 HYRGVRRRP-WGKYAAEIRDP---NkKGVRVWLGTFDTAVEAARGYDRAAFKLRG 115
                          7********.**********9...4345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3164124IPR001471AP2/ERF domain
PROSITE profilePS5103224.2165123IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2365124IPR016177DNA-binding domain
PfamPF008471.6E-1265115IPR001471AP2/ERF domain
SMARTSM003802.9E-3765129IPR001471AP2/ERF domain
CDDcd000187.67E-3265123No hitNo description
PRINTSPR003673.5E-106677IPR001471AP2/ERF domain
PRINTSPR003673.5E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASSQDQSAL DLITQHLLTD FPSLETFVSS IHQSTTSTLS QRKPSLATIS VPTTAPVVQE  60
DDHRHYRGVR RRPWGKYAAE IRDPNKKGVR VWLGTFDTAV EAARGYDRAA FKLRGSKAIL  120
NFPLEAGKHE DSGDNNNNNT VALKSKRKRP ETQDENHGRN LISHKAVKRE ETEAQGEACP  180
LTPSSWMGFW DGVEGIGMGL FYVPPLSPYP SLEHSQLGVK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2864130470ATERF1
3gcc_A1e-2864130470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.227202e-78flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120974001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140873.11e-159PREDICTED: ethylene-responsive transcription factor ERF105
SwissprotQ8VY901e-119EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A3P6DAF31e-158A0A3P6DAF3_BRACM; Uncharacterized protein
TrEMBLM4F3T21e-158M4F3T2_BRARP; Uncharacterized protein
STRINGBra035732.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-122ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  4. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  5. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]