PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120696001
Common NameGSBRNA2T00120696001, LOC106382246
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 348aa    MW: 38383.5 Da    PI: 5.4736
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120696001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ ++e++   +C+++  +lC +C  + H+       H++
  GSBRNA2T00120696001  4 ICDFCNEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                         7*****************************65677777776 PP
2zf-B_box284.6e-094689442
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                          +C++++ ++++  C d ++ lC++C  ++H++     H+++++
  GSBRNA2T00120696001 46 LICERCNAQPASVRCSDERVSLCQNCDWSGHNNdatsqHKRQSI 89
                         68*****************************9999999998875 PP
3CCT58.91.8e-20290333144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a+lRYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  GSBRNA2T00120696001 290 RNNAVLRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 333
                          99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.655147IPR000315B-box-type zinc finger
CDDcd000213.92E-7447No hitNo description
SMARTSM003363.0E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.7274389IPR000315B-box-type zinc finger
PfamPF006432.3E-54689IPR000315B-box-type zinc finger
CDDcd000212.79E-64789No hitNo description
SMARTSM003360.274889IPR000315B-box-type zinc finger
PfamPF062035.0E-15290332IPR010402CCT domain
PROSITE profilePS5101714.991290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGYICDFCNE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWSGHNNDA TSQHKRQSIN CYSGCPSSEE LASIWSFCLD SDLDFTSAGP  120
SACEQEVGLM TIDEGTGEEK TGVQNVNVDQ PGTSFALAKE IGVSEDDFCG NLMMDEVDLA  180
FEKYDELFGT AYNSSKDLFE HGGIGSLFEK HEGSKAMQQP AGSNAASEDS FMTCRTGPII  240
CFSSQPAHSN ISFSVVMGES SDCGASSMEK LSREITSQEE TNASSHATTR NNAVLRYKEK  300
KKARKFDKRV RYVSRKERAD VRRRVKGRFV KSGEAYDYDP MSPARSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120696001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399572e-75AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426072e-75AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616451.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_013677694.10.0zinc finger protein CONSTANS-LIKE 10 isoform X1
RefseqXP_013677695.10.0zinc finger protein CONSTANS-LIKE 10 isoform X1
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0D3AWU10.0A0A0D3AWU1_BRAOL; Uncharacterized protein
STRINGBo2g149810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]