PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00120624001 | ||||||||
Common Name | GSBRNA2T00120624001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 132aa MW: 14527.7 Da PI: 10.3097 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 5.2e-19 | 28 | 61 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk+ GSBRNA2T00120624001 28 CADCGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 61 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-13 | 22 | 73 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.44 | 22 | 58 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.47E-12 | 25 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.3E-15 | 26 | 61 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.05E-12 | 27 | 71 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 28 | 53 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.7E-17 | 28 | 62 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MLDHSEEEYS ETMKRRAGDA IEQNKKTCAD CGTSKTPLWR GGPAGPKSLC NACGIRNRKK 60 RRGAEDKKQK KTNSGGGDLK RSPKFGESMK QRIMDLGMTK RSTVEKQLRK LGEEEQAAVL 120 LMALSYGSVY A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.28524 | 0.0 | seed |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00120624001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675406.1 | 4e-91 | GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 1e-63 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A0D2ZRJ2 | 9e-83 | A0A0D2ZRJ2_BRAOL; Uncharacterized protein | ||||
STRING | Bo00847s050.1 | 2e-83 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-66 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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