PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00120618001 | ||||||||
Common Name | GSBRNA2T00120618001, LOC106380184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 33151.8 Da PI: 5.4883 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.6e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT eEde+l ++++ G g+W++ +++ g+ R++k+c++rw +yl GSBRNA2T00120618001 14 RGRWTSEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++ + +++ + G+ W++Ia++++ gRt++++k++w+++l GSBRNA2T00120618001 67 RGNITAEEEDTIFKLHSLIGNS-WSLIAKHLP-GRTDNEIKNYWNSHL 112 7999****************99.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.587 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.71E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.966 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGKAPCCEKI GLKRGRWTSE EDEILTKYIQ TNGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LRMNLKRGNI TAEEEDTIFK LHSLIGNSWS LIAKHLPGRT DNEIKNYWNS HLSRKIYSYG 120 VNNDNNTKKK KGRTSRSSMK KHKQMVTALQ CLPQSKDLDS ENTDIGHING YFEGESLEPY 180 EWLDGEMERF MNSFVWECSN EEAVIEVNHD ESGQNESGDN SSCRVDLVTK DKENFGNKVT 240 DHDASVENKR DKSVLSSSSN ENGGTDWWVG LCDTSEVGFG IDDELLEWEF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-23 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 8e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00120618001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ317140 | 1e-127 | HQ317140.1 Brassica rapa subsp. rapa cultivar Tsuda MYB domain protein 111 (MYB111) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675450.1 | 0.0 | transcription factor MYB111 | ||||
Swissprot | Q9FJ07 | 1e-138 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A3P6E271 | 1e-175 | A0A3P6E271_BRAOL; Uncharacterized protein | ||||
STRING | Bra036145.1-P | 1e-142 | (Brassica rapa) | ||||
STRING | XP_006395072.1 | 1e-143 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-131 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Entrez Gene | 106380184 |