PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00120517001

Common Name

GSBRNA2T00120517001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 945aa MW: 105975 Da PI: 9.1136

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00120517001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.9	1.1e-08	44	77	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 WT+ E e++++a +++G + Wk++a+ + ++R+ GSBRNA2T00120517001 44 QWTKVELERFYEAYRKHGRD-WKKVAAVVRNNRSV 77 6***************77.*****9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	41	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.3E-8	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-7	44	81	IPR001005	SANT/Myb domain
CDD	cd00167	4.20E-4	45	80	No hit	No description
Pfam	PF06584	9.2E-29	567	666	IPR033471	DIRP domain
SMART	SM01135	8.5E-46	567	667	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MGPSRTSKSV YKRSNKEASP EKELRNSSKT KPRKKRLTDK LGPQWTKVEL ERFYEAYRKH 60 GRDWKKVAAV VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE 120 EEEEEEEEEE GHGASVKYQK RKLAQLSSSD FRQEVIPPHS VASAGGCLPF LKLTQAYGIE 180 RRAAGKRTPR FPVPSEYERE DREVSMPPSK RAKKQLDADD DDTLALAMAN AARRGEESQY 240 RRAEVNGNTS NGKMSQAKEA QSKHGASSMV RNVVRIRRDR RHIKAAPGGA LLVNTEGVGT 300 VEVPQKGKNV RREEAEGAAS NDSGEAGSAN EGFKSGDEFE ALQALAALSG LLSPDGLTES 360 ESNPQLKEDI IANNVDEKPH TPETFVRSYQ RRKSKQAGPE DSLPHAISPA NTRKPKSAQE 420 TIDANAGFVE EAGTLKRKRK TLHDKESAKD DDLKTMFKAR RADQSPPKKL RTAKTAEESS 480 SPSDKKITEP DAVVSATQVS GPGPASLPQR PPNRRKMSLK KSLRERAKIS ETTHEKPHSC 540 KKELLKEQVS TCLSCPLVRR RCIYEWFYSA IDYPWFAKME FIDFLNHLGI GTPRLTRLEW 600 SVIKSSLGRT RRFSEKFIQE ERDKLKQYRE SARKHYTELR AGAREVLPRD FAQPLSVGNR 660 VIAIHPKTRE VRDGKILTVD HNKCNVLFDD LGADMVMDID IMPLNPLEYM PDGLMRQIES 720 KEAELNRQPS SDKSALFPPP VLENIDFSMV PPKKQDDRDK RVTTDQSYNI ANDNARQGEN 780 QRALMLEYAS DAEEMGPEML GIVSGSRSIA QAMVDAAMKA ASLVKDDKDK RNVVLQALDS 840 IVSGLKHQGQ TNGSFDHHHQ SWSPSNTEGL MTSELIASCL STWLMIQRCT EKQYPPADIA 900 QVMEIAVRSL EPRCPQNMPI YRDIQTCMGW ITNQIMCLVK PMKI*

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MGPSRTSKSV YKRSNKEASP EKELRNSSKT KPRKKRLTDK LGPQWTKVEL ERFYEAYRKH  60
GRDWKKVAAV VRNNRSVDMV EALFNMNRAY LSLPEGTASV VGLIAMMTDH YSVIEESESE  120
EEEEEEEEEE GHGASVKYQK RKLAQLSSSD FRQEVIPPHS VASAGGCLPF LKLTQAYGIE  180
RRAAGKRTPR FPVPSEYERE DREVSMPPSK RAKKQLDADD DDTLALAMAN AARRGEESQY  240
RRAEVNGNTS NGKMSQAKEA QSKHGASSMV RNVVRIRRDR RHIKAAPGGA LLVNTEGVGT  300
VEVPQKGKNV RREEAEGAAS NDSGEAGSAN EGFKSGDEFE ALQALAALSG LLSPDGLTES  360
ESNPQLKEDI IANNVDEKPH TPETFVRSYQ RRKSKQAGPE DSLPHAISPA NTRKPKSAQE  420
TIDANAGFVE EAGTLKRKRK TLHDKESAKD DDLKTMFKAR RADQSPPKKL RTAKTAEESS  480
SPSDKKITEP DAVVSATQVS GPGPASLPQR PPNRRKMSLK KSLRERAKIS ETTHEKPHSC  540
KKELLKEQVS TCLSCPLVRR RCIYEWFYSA IDYPWFAKME FIDFLNHLGI GTPRLTRLEW  600
SVIKSSLGRT RRFSEKFIQE ERDKLKQYRE SARKHYTELR AGAREVLPRD FAQPLSVGNR  660
VIAIHPKTRE VRDGKILTVD HNKCNVLFDD LGADMVMDID IMPLNPLEYM PDGLMRQIES  720
KEAELNRQPS SDKSALFPPP VLENIDFSMV PPKKQDDRDK RVTTDQSYNI ANDNARQGEN  780
QRALMLEYAS DAEEMGPEML GIVSGSRSIA QAMVDAAMKA ASLVKDDKDK RNVVLQALDS  840
IVSGLKHQGQ TNGSFDHHHQ SWSPSNTEGL MTSELIASCL STWLMIQRCT EKQYPPADIA  900
QVMEIAVRSL EPRCPQNMPI YRDIQTCMGW ITNQIMCLVK PMKI*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00120517001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129869.1	0.0	PREDICTED: protein ALWAYS EARLY 1-like
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	A0A398AFK5	0.0	A0A398AFK5_BRACM; Uncharacterized protein
STRING	Bra020584.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	4e-66	DNA binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]