PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120250001
Common NameGSBRNA2T00120250001, LOC106380068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 185aa    MW: 20877.6 Da    PI: 8.635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120250001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17955454
                  AP2  4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                         +GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  GSBRNA2T00120250001  9 RGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                         9*****9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.429764IPR001471AP2/ERF domain
SMARTSM003803.9E-38770IPR001471AP2/ERF domain
PfamPF008471.8E-10856IPR001471AP2/ERF domain
PRINTSPR003674.8E-10819IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-20866IPR016177DNA-binding domain
CDDcd000181.27E-34966No hitNo description
Gene3DG3DSA:3.30.730.105.4E-33964IPR001471AP2/ERF domain
PRINTSPR003674.8E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTRPQQRLRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFPYNPNAI PSPSSKLLSA TLTAKLHKCY MASLQMTKQS QTQTQNTRLR PLSLPDTHGV  120
NNVTLDGGTQ YNTGGVTEMK CDDGNSNFKQ NFRPLEEDHI EQMIEELLHY GSIEFCSVLP  180
SQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16969768ATERF1
3gcc_A2e-16969768ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120250001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619393.11e-138PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_013675342.11e-138ethylene-responsive transcription factor ERF003
SwissprotQ94AW56e-94ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D3AXR21e-137A0A0D3AXR2_BRAOL; Uncharacterized protein
STRINGBo2g158960.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.18e-85ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]