PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120243001
Common NameGSBRNA2T00120243001, LOC106382631
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 405aa    MW: 44842.6 Da    PI: 5.9872
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120243001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.3e-083413742154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00120243001 341 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 374
                          469*****************************87 PP
2ELK28.92.6e-10295316122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  GSBRNA2T00120243001 295 ELKHELKQGYKEKIVDIREEIL 316
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-18128172IPR005540KNOX1
PfamPF037903.6E-17131171IPR005540KNOX1
SMARTSM012562.0E-29183238IPR005541KNOX2
PfamPF037912.5E-21187237IPR005541KNOX2
PfamPF037899.3E-7295316IPR005539ELK domain
SMARTSM011886.1E-4295316IPR005539ELK domain
PROSITE profilePS512139.969295315IPR005539ELK domain
PROSITE profilePS5007111.726315378IPR001356Homeobox domain
SMARTSM003892.4E-11317382IPR001356Homeobox domain
SuperFamilySSF466894.28E-16317381IPR009057Homeodomain-like
CDDcd000861.17E-11318379No hitNo description
Gene3DG3DSA:1.10.10.603.3E-25322379IPR009057Homeodomain-like
PfamPF059201.1E-17335374IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ DGPPPPPSQQ QQHFHDPPPP NWLNTALLRS DNNNNFLNLH  60
TSAATTSDSP SSAAANQWLP RSSSILQRTE NNNSSGAAVV IDEGGAETMI GGENKNDGGG  120
GAVSWQNARQ KAEILSHPLY EQLLSAHVAC LRTATPVDQL PRIDAQLAQS QNVVAQYSAL  180
GAGQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS  240
PGEGTGATMS DDEDEQQVES DANMFDGGGG LDVLGFGPLV PTESERSLME RVRQELKHEL  300
KQGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHS KWPYPTEEDK ARLVQETGLQ  360
LKQINNWFIN QRKRNWHSNP SSSTVLKNKR KNNAGDSSGR ERFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12318382872Homeobox protein PKNOX1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.230581e-120leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120243001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529660.0AK352966.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678117.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3P6DTB90.0A0A3P6DTB9_BRAOL; Uncharacterized protein
STRINGBo2g158910.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]