PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00120198001
Common NameGSBRNA2T00120198001, LOC106403695, LOC106414981
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 479aa    MW: 52644.8 Da    PI: 6.6276
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00120198001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.9e-13113151241
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          ++++C+Ck s+Clk+YCeCfa+g++C+  C+C +C+N+ e
  GSBRNA2T00120198001 113 KQRRCKCKASRCLKLYCECFASGSYCNG-CNCLKCQNTLE 151
                          7899************************.********976 PP
2TCR482.5e-15191230140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k+++gCnCk+s ClkkYCeC++a++ Cse+C+C +CkN e
  GSBRNA2T00120198001 191 KHSRGCNCKRSGCLKKYCECYQANARCSENCRCRHCKNFE 230
                          5899**********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.6E-14112152IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.125113231IPR005172CRC domain
PfamPF036382.2E-10115149IPR005172CRC domain
SMARTSM011144.1E-15191232IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-11194229IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEKSDQDSVS NRNHSPRQSD SSVPAAAAEA KMDSSNESAI KQSHPVLDSQ DRREEDLPSH  60
PHTPPSSSEK QPSATQDATP PQTLPVHRNQ EPLTPRGQQQ TEAESNDDGT PSKQRRCKCK  120
ASRCLKLYCE CFASGSYCNG CNCLKCQNTL ENEAERQEAI KAILERNPGA FKRKIGASPQ  180
EDVSQLVTLG KHSRGCNCKR SGCLKKYCEC YQANARCSEN CRCRHCKNFE GSQDIKQTTN  240
ATVDLAIDLP QSRKIKAASH SVADRGSSAV PHVQDQTVNY VGRNGDTSLF TVPNNRVVSG  300
STAPTYSYRS SQSDTNQLRH AKELCSLLVS KSVEVANRMS GTDKKRKAEK DSSLDSAQRD  360
ANVMNDSPDC VLDAGRMDEK PMSPATRALM CDEELVTISE KETSARVRTS QEKEDTDTSS  420
EVYAEQENQI LSSFRDHLMQ LFNRGSINGT NIQKANTDPS RKEPEDEEQS HGDSSLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-2911723614128Protein lin-54 homolog
5fd3_B7e-2911723614128Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00120198001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324503e-75AC232450.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013699959.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_013711028.10.0protein tesmin/TSO1-like CXC 7 isoform X1
SwissprotF4JY841e-160TCX7_ARATH; Protein tesmin/TSO1-like CXC 7
TrEMBLA0A0D3AXL40.0A0A0D3AXL4_BRAOL; Uncharacterized protein
STRINGBo2g158480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134631628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.11e-161Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]