PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00119998001 | ||||||||
Common Name | GSBRNA2T00119998001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 180aa MW: 20294.9 Da PI: 9.8377 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 92.5 | 5.2e-29 | 51 | 110 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++YVN+KQy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRgsgGrF GSBRNA2T00119998001 51 GTIYVNSKQYHGIIRRRQSRAKAASvlhHNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 110 689*********************999999*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.5E-29 | 48 | 113 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.35 | 49 | 113 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.2E-21 | 52 | 74 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 9.7E-24 | 52 | 110 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.2E-21 | 87 | 110 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKPPCLEFGF SQPQMYTKYP CVEEEYYGVV VSAYGSQSRV MLPLNMETED GTIYVNSKQY 60 HGIIRRRQSR AKAASVLHHN KLSSRGRKPY MHHSRHLHAL RRPRGSGGRF LNTKSQKADD 120 TKQTQSQPQK SNSQNSEVIH PEGQIMNLSH GLNVSVSEVT SMNYFLTAAM DNGCLDFNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 3e-17 | 50 | 113 | 2 | 62 | HAPB protein |
4g92_A | 3e-17 | 50 | 113 | 2 | 62 | HAPB protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00119998001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352991 | 1e-117 | AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696108.1 | 1e-126 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-2 | ||||
Swissprot | Q9M9X4 | 2e-94 | NFYA2_ARATH; Nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A078G025 | 3e-94 | A0A078G025_BRANA; BnaAnng02740D protein | ||||
TrEMBL | A0A0D3AFG3 | 2e-94 | A0A0D3AFG3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A398AU28 | 2e-94 | A0A398AU28_BRACM; Uncharacterized protein | ||||
STRING | Bo1g150420.1 | 4e-95 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05690.1 | 4e-86 | nuclear factor Y, subunit A2 |
Publications ? help Back to Top | |||
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