PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00119645001

Common Name

GSBRNA2T00119645001, LOC106422686

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 214aa MW: 24184.7 Da PI: 5.5533

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00119645001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.7e-12	99	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky GSBRNA2T00119645001 99 PWSENEHKLFLIGLDRYGKGDWRSISRNVVVTRTPTQVASHAQKY 143 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.516	1	51	IPR017877	Myb-like domain
SMART	SM00717	8.6E-6	2	53	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.64E-11	4	59	IPR009057	Homeodomain-like
CDD	cd00167	9.48E-5	6	51	No hit	No description
PROSITE profile	PS51294	17.593	92	148	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-15	94	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-16	95	147	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-7	96	146	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-9	98	142	IPR009057	Homeodomain-like
CDD	cd00167	5.68E-7	99	144	No hit	No description
Pfam	PF00249	1.2E-10	99	143	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MASSQWTRSE DKMFEEALVF FPEGSPNRWE RIADQLHKPV GEVREHYEAL VHDVFQIDSG 60 QVDVPDYIDD SAAAAGWDSA GQISFGTKHS EGERKRGTPW SENEHKLFLI GLDRYGKGDW 120 RSISRNVVVT RTPTQVASHA QKYFLRQNSV KKERKRSSIH DITTVDTSLA MPDSNMEWSG 180 QHESPVQTQQ QIVSEFGQQL TPGGHFEDFG FGM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00119645001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189388	1e-174	AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013718915.1	1e-158	transcription factor DIVARICATA
Refseq	XP_022553714.1	1e-158	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	5e-56	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A398A563	1e-156	A0A398A563_BRACM; Uncharacterized protein
STRING	Bra028780.1-P	1e-152	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-127	MYB family protein

Link Out ? help Back to Top
Entrez Gene	106422686

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]