PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00119617001 | ||||||||
Common Name | GSBRNA2T00119617001, LOC106425300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 26098.5 Da PI: 9.6158 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 74 | 127 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+ ql Le+ F+ + +++ +++ +L++ lgL+ rq+ vWFqNrRa++k GSBRNA2T00119617001 74 KKKRLTSGQLASLEQSFQGEIKLDSDRKLKLSRDLGLQPRQIAVWFQNRRARWK 127 45679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114 | 9.1e-37 | 74 | 164 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl++ q+++LE+sF+ e kL+++rK +l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y++L+++yd +++e+++L++ev++Lr+ l GSBRNA2T00119617001 74 KKKRLTSGQLASLEQSFQGEIKLDSDRKLKLSRDLGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDLVSREKQMLHEEVKKLRAVL 163 9**************************************************************************************877 PP HD-ZIP_I/II 92 k 92 + GSBRNA2T00119617001 164 R 164 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-17 | 60 | 131 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 67 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.325 | 69 | 129 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-15 | 71 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 74 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-13 | 74 | 130 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEWSMTSNVE NVRVAFLPQP WPESSSFNSL HSFNYHPYAA GNSYTQTGPV ISVPESDKII 60 NAYRYPSNKN EMTKKKRLTS GQLASLEQSF QGEIKLDSDR KLKLSRDLGL QPRQIAVWFQ 120 NRRARWKAKQ LEQLYDSLRQ EYDLVSREKQ MLHEEVKKLR AVLRDQGLIK KQISGGEDTT 180 ELPSVVIAQP RMENLHTNQL TGVNQIYGID QCNNPMVVAS SSWPPYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRARWKAKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00119617001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232522 | 1e-112 | AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013721484.1 | 1e-170 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
Swissprot | Q9LZR0 | 1e-134 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A398A8C5 | 1e-166 | A0A398A8C5_BRACM; Uncharacterized protein | ||||
STRING | Bra028820.1-P | 1e-164 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-136 | homeobox 51 |
Link Out ? help Back to Top | |
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Entrez Gene | 106425300 |
Publications ? help Back to Top | |||
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