PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00119122001
Common NameGSBRNA2T00119122001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 366aa    MW: 38824.6 Da    PI: 11.1969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00119122001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.8e-072803132255
                  AP2  22 pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          ++     kr r++lg++ ta+ Aa a++ a+ +l+g
  GSBRNA2T00119122001 280 WN--PpnKRSRIWLGSYKTAFAAACAYDTAAFYLRG 313
                          32..23358*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.813238321IPR001471AP2/ERF domain
SMARTSM003801.8E-13275327IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-10280322IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-15283322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGGEVRGSEN QKPFLNATRA TTSFGCEILP LISRNLFMYA LSGSKSACLR FQRSASVTLV  60
SMKTEYCFRN VGTNWESGSV KKRSYGSMQR RSSGGGSVKK RSSGGGSVKQ RNSGGGSVKK  120
RSYGCGSVKK RSYGSCGGSV KKRSSGGGSV KKRSSGGGSL KKRSYGGGSV KKISYGGGSM  180
QRSSSGGGSV KKRSSGGGLV RKPKKRLDAV PMGFPAGDMG CQTLPKGSEC PFAKPSPPYG  240
GLHKVPPFIL LARPLGIFPI KKDFPMEKKG QVVLIEKRKW NPPNKRSRIW LGSYKTAFAA  300
ACAYDTAAFY LRGSLARLNF PEQVLPDRNA VVSVGGDMSA AFIRQKAEEV GARVDAELRT  360
ESSIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00119122001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6947435e-36AB694743.1 Raphanus sativus mitochondrial DNA, complete genome, cultivar: Uchiki-gensuke.
GenBankAC1728605e-36AC172860.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB042G11, complete sequence.
GenBankAP0064445e-36AP006444.1 Brassica napus mitochondrial DNA, complete genome.
GenBankAP0129885e-36AP012988.1 Brassica oleracea mitochondrial DNA, complete sequence, cultivar: Fujiwase.
GenBankAP0129905e-36AP012990.1 Raphanus sativus mitochondrial DNA, complete sequence, cultivar: Black radish.
GenBankAP0129915e-36AP012991.1 Raphanus sativus mitochondrial DNA, complete sequence, cultivar: Uchiki-gensuke OS40-type.
GenBankAP0130775e-36AP013077.1 Raphanus sativus mitochondrial DNA, complete sequence.
GenBankBNAMTNAD35e-36D13697.1 Brassica napus mitochondrial nad3, rps12 and ccb206 genes for NADH dehydrogenase subunit 3, ribosomal protein S12 and HelB-homologue protein, complete cds.
GenBankFR7152495e-36FR715249.1 Brassica napus complete mitochondrial genome, cultivar Polima, isolate NH12A.
GenBankJF9202855e-36JF920285.1 Brassica rapa subsp. campestris mitochondrion, complete genome.
GenBankJF9202865e-36JF920286.1 Brassica oleracea mitochondrial DNA, complete genome.
GenBankJF9202885e-36JF920288.1 Brassica juncea mitochondrial DNA, complete genome.
GenBankJQ0836685e-36JQ083668.1 Raphanus sativus mitochondrion, complete genome.
GenBankKJ4614455e-36KJ461445.1 Brassica juncea var. tumida mitochondrion, complete genome.
GenBankKJ7164845e-36KJ716484.1 Raphanus sativus cultivar WK10039 mitochondrion, complete genome.
GenBankKJ8206835e-36KJ820683.1 Brassica oleracea var. botrytis mitochondrion, complete genome.
GenBankKM4549745e-36KM454974.1 Brassica napus strain DH366 mitochondrion, complete genome.
GenBankKM4549755e-36KM454975.1 Brassica napus strain 56366 mitochondrion, complete genome.
GenBankKP1616185e-36KP161618.1 Brassica napus strain 51218 mitochondrion, complete genome.
GenBankKT9880715e-36KT988071.2 Schrenkiella parvula mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713649.11e-115keratin, type II cytoskeletal 2 epidermal-like
TrEMBLA0A3P6DJ610.0A0A3P6DJ61_BRAOL; Uncharacterized protein
STRINGBo9g080710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.12e-22related to AP2 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]