PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00119122001 | ||||||||
Common Name | GSBRNA2T00119122001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 366aa MW: 38824.6 Da PI: 11.1969 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.2 | 1.8e-07 | 280 | 313 | 22 | 55 |
AP2 22 pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ kr r++lg++ ta+ Aa a++ a+ +l+g GSBRNA2T00119122001 280 WN--PpnKRSRIWLGSYKTAFAAACAYDTAAFYLRG 313 32..23358*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.813 | 238 | 321 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-13 | 275 | 327 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-10 | 280 | 322 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-15 | 283 | 322 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MGGEVRGSEN QKPFLNATRA TTSFGCEILP LISRNLFMYA LSGSKSACLR FQRSASVTLV 60 SMKTEYCFRN VGTNWESGSV KKRSYGSMQR RSSGGGSVKK RSSGGGSVKQ RNSGGGSVKK 120 RSYGCGSVKK RSYGSCGGSV KKRSSGGGSV KKRSSGGGSL KKRSYGGGSV KKISYGGGSM 180 QRSSSGGGSV KKRSSGGGLV RKPKKRLDAV PMGFPAGDMG CQTLPKGSEC PFAKPSPPYG 240 GLHKVPPFIL LARPLGIFPI KKDFPMEKKG QVVLIEKRKW NPPNKRSRIW LGSYKTAFAA 300 ACAYDTAAFY LRGSLARLNF PEQVLPDRNA VVSVGGDMSA AFIRQKAEEV GARVDAELRT 360 ESSIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00119122001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB694743 | 5e-36 | AB694743.1 Raphanus sativus mitochondrial DNA, complete genome, cultivar: Uchiki-gensuke. | |||
GenBank | AC172860 | 5e-36 | AC172860.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrB042G11, complete sequence. | |||
GenBank | AP006444 | 5e-36 | AP006444.1 Brassica napus mitochondrial DNA, complete genome. | |||
GenBank | AP012988 | 5e-36 | AP012988.1 Brassica oleracea mitochondrial DNA, complete sequence, cultivar: Fujiwase. | |||
GenBank | AP012990 | 5e-36 | AP012990.1 Raphanus sativus mitochondrial DNA, complete sequence, cultivar: Black radish. | |||
GenBank | AP012991 | 5e-36 | AP012991.1 Raphanus sativus mitochondrial DNA, complete sequence, cultivar: Uchiki-gensuke OS40-type. | |||
GenBank | AP013077 | 5e-36 | AP013077.1 Raphanus sativus mitochondrial DNA, complete sequence. | |||
GenBank | BNAMTNAD3 | 5e-36 | D13697.1 Brassica napus mitochondrial nad3, rps12 and ccb206 genes for NADH dehydrogenase subunit 3, ribosomal protein S12 and HelB-homologue protein, complete cds. | |||
GenBank | FR715249 | 5e-36 | FR715249.1 Brassica napus complete mitochondrial genome, cultivar Polima, isolate NH12A. | |||
GenBank | JF920285 | 5e-36 | JF920285.1 Brassica rapa subsp. campestris mitochondrion, complete genome. | |||
GenBank | JF920286 | 5e-36 | JF920286.1 Brassica oleracea mitochondrial DNA, complete genome. | |||
GenBank | JF920288 | 5e-36 | JF920288.1 Brassica juncea mitochondrial DNA, complete genome. | |||
GenBank | JQ083668 | 5e-36 | JQ083668.1 Raphanus sativus mitochondrion, complete genome. | |||
GenBank | KJ461445 | 5e-36 | KJ461445.1 Brassica juncea var. tumida mitochondrion, complete genome. | |||
GenBank | KJ716484 | 5e-36 | KJ716484.1 Raphanus sativus cultivar WK10039 mitochondrion, complete genome. | |||
GenBank | KJ820683 | 5e-36 | KJ820683.1 Brassica oleracea var. botrytis mitochondrion, complete genome. | |||
GenBank | KM454974 | 5e-36 | KM454974.1 Brassica napus strain DH366 mitochondrion, complete genome. | |||
GenBank | KM454975 | 5e-36 | KM454975.1 Brassica napus strain 56366 mitochondrion, complete genome. | |||
GenBank | KP161618 | 5e-36 | KP161618.1 Brassica napus strain 51218 mitochondrion, complete genome. | |||
GenBank | KT988071 | 5e-36 | KT988071.2 Schrenkiella parvula mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013713649.1 | 1e-115 | keratin, type II cytoskeletal 2 epidermal-like | ||||
TrEMBL | A0A3P6DJ61 | 0.0 | A0A3P6DJ61_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g080710.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 2e-22 | related to AP2 9 |
Publications ? help Back to Top | |||
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