PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00118741001 | ||||||||
Common Name | GSBRNA2T00118741001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 75887.9 Da PI: 7.7676 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.4e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF GSBRNA2T00118741001 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL 199 89****************************987555555..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++++ l+v+++r+ GSBRNA2T00118741001 200 --RSETGDLCVGIRRA 213 ..4588999****996 PP | |||||||
2 | Auxin_resp | 114.4 | 1e-37 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ GSBRNA2T00118741001 261 AVARAACGQAFEVVYYPRASTPEFCVKASDVRSAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 344 56778899**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.3E-37 | 104 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-29 | 105 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.98E-21 | 111 | 212 | No hit | No description |
SMART | SM01019 | 1.9E-21 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.098 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-32 | 262 | 344 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.934 | 572 | 651 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MEQERSLDPQ LWHACAGSMV QIPSLNSTVF YFPQGHAEHA HAPPDFHAPR VPPLILCRVA 60 SVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDVNGNEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTAEPPVQ TVIAKDIHGE TWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL IAGDSIVFLR SETGDLCVGI RRAKRGGFLR DDEITTSKLM MMKRNATGGG 240 GNANDANAPG GRVRVEAVAE AVARAACGQA FEVVYYPRAS TPEFCVKASD VRSAMRIRWC 300 SGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW RLLQVAWDEP DLLQNVKRVS 360 PWLVELVSNM PAIHLSPFSP RKKLRIPQPF DFPFDGTKFP MFSPGFAAGN NGGGESMCYL 420 STNDNNNNAP AGIQGARQAQ QLFGSPSPSL LSDLNLNTFH SGNKLQQSSS SPAMFLSGFN 480 PRHHYDNIVV PRQTRDAEFN NNISCSLTIG NPGLVQDKKK SGSVKTHQFL LFGQPILTEQ 540 QVMNRKRALE EEAEKEEKGG LTWNYGLQGI ETGHCKVFME SEDVGRTLDL SVIGSYQELY 600 RKLAEMFGIE ERSDLLTHVV YRDANGVTKR IGDEPFSDFM RATKRLTIKM DISGDNVRKT 660 WITGIRNGEN GIDSSTKTGQ LSIFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-81 | 7 | 365 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11840 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00118741001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979475 | 0.0 | JN979475.1 Brassica rapa subsp. pekinensis auxin response factor 10 (ARF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009103678.1 | 0.0 | PREDICTED: auxin response factor 10 | ||||
Refseq | XP_009103679.1 | 0.0 | PREDICTED: auxin response factor 10 | ||||
Swissprot | Q9SKN5 | 0.0 | ARFJ_ARATH; Auxin response factor 10 | ||||
TrEMBL | A0A3P6BMD4 | 0.0 | A0A3P6BMD4_BRACM; Auxin response factor | ||||
STRING | Bra011955.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |