PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00118005001
Common NameGSBRNA2T00118005001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32452.9 Da    PI: 7.2831
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00118005001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.8e-313080151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g++KKA+E+SvLCdaeva+++fs++gkl+eys+
  GSBRNA2T00118005001 30 KRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYST 80
                         79***********************************************96 PP
2K-box108.66.9e-36981953100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +++  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++++i+elq+kek++qe+n 
  GSBRNA2T00118005001  98 ERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNS 187
                          5566666677789***************************************************************************** PP

                K-box  93 aLrkklee 100
                          +L+k+++e
  GSBRNA2T00118005001 188 MLSKQIKE 195
                          *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.1272282IPR002100Transcription factor, MADS-box
CDDcd002658.97E-4323100No hitNo description
SuperFamilySSF554551.83E-3423112IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003194.0E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-304459IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-305980IPR002100Transcription factor, MADS-box
PfamPF014861.5E-30105193IPR002487Transcription factor, K-box
PROSITE profilePS5129717.189109199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQSEGDTWDG PVEIVPLKGI KMGRGRVQLK RIENKINRQV TFSKRRAGLM KKAHEISVLC  60
DAEVALVVFS HKGKLFEYST DSCMEKILER YERYSYAERQ LIAPESDSNT NWSMEYNRLK  120
AKIELLERNQ RHYLGEDLQA MSPKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK  180
AIQEQNSMLS KQIKERENVL RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF  240
LNMGGLYQEE DQMAMRRNDL DLSLEPVYNC NLGCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-222295173MEF2 CHIMERA
6byy_B3e-222295173MEF2 CHIMERA
6byy_C3e-222295173MEF2 CHIMERA
6byy_D3e-222295173MEF2 CHIMERA
6bz1_A3e-222295173MEF2 CHIMERA
6bz1_B3e-222295173MEF2 CHIMERA
6bz1_C3e-222295173MEF2 CHIMERA
6bz1_D3e-222295173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166590.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in floral primordia and is maintained at a maximal level at the floral bud stage of arrest. {ECO:0000269|PubMed:18332227}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00118005001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold shock (e.g. from 22/17 to 16/12 degrees Celsius in light/night respectively). {ECO:0000269|PubMed:18332227}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058450.0AJ505845.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-a.
GenBankBOU674520.0U67452.1 Brassica oleracea homeotic protein boi2AP1 (Boi2AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589842.10.0PREDICTED: floral homeotic protein APETALA 1 A
RefseqXP_013695795.10.0floral homeotic protein APETALA 1 A
SwissprotB4YPW60.0AP1A_BRAOA; Floral homeotic protein APETALA 1 A
SwissprotQ8GTF50.0AP1A_BRAOB; Floral homeotic protein APETALA 1 A
SwissprotQ963560.02AP1_BRAOT; Floral homeotic protein APETALA 1-2
TrEMBLA0A3N6SZE00.0A0A3N6SZE0_BRACR; Uncharacterized protein
STRINGBo6g095760.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-164MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]