PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00117331001
Common NameGSBRNA2T00117331001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 288aa    MW: 33423.4 Da    PI: 5.8746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00117331001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-152067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll ++++  G g+W++ a+  g++R +k+c++rw++yl
  GSBRNA2T00117331001 20 KGPWTLEEDTLLTNYIAHNGEGRWNLLAKSSGLKRKGKSCRLRWLNYL 67
                         79******************************99************97 PP
2Myb_DNA-binding48.52e-1573116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00117331001  73 RGNLTPQEQLLILELHCKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 116
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2681567IPR017930Myb domain
SuperFamilySSF466898.61E-2918114IPR009057Homeodomain-like
SMARTSM007171.7E-121969IPR001005SANT/Myb domain
PfamPF002492.8E-132067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-212174IPR009057Homeodomain-like
CDDcd001671.50E-82267No hitNo description
PROSITE profilePS5129424.11768122IPR017930Myb domain
SMARTSM007173.9E-1372120IPR001005SANT/Myb domain
PfamPF002491.8E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2275121IPR009057Homeodomain-like
CDDcd001678.05E-1077116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSNIMKKRCN ENEESTEQRK GPWTLEEDTL LTNYIAHNGE GRWNLLAKSS GLKRKGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHCK WGNRWSKIAQ YLPGRTDNEI KNYWRTRVQK  120
QARQLNIDSS SHQFLEVVRS FWVPRLIHKI KDNTNTNTRA PPTDSLGPVL QDNNFSHNLG  180
LNNIDCSTSM SQDLAKISQL MDLSDLETTS SVCLEGSRGS SNQYVNEDSR YFHCLEEEYI  240
FPTMGNSDIL PLQDCHVADS TYEEDVTQDP MWNMDDIWHF EEYAPFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24201227108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15157LKRKGKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00117331001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596475.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9C9G71e-100MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0D3D6N10.0A0A0D3D6N1_BRAOL; Uncharacterized protein
STRINGBo7g050560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-162myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]