PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00116732001 | ||||||||
Common Name | GSBRNA2T00116732001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 709aa MW: 78208.8 Da PI: 7.1229 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.1 | 2.3e-21 | 104 | 159 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+++l+L++rqVk+WFqNrR+++k GSBRNA2T00116732001 104 KKRYHRHTPHQIQELESVFKECPHPDEKQRLDLSRRLNLDTRQVKFWFQNRRTQMK 159 688999***********************************************999 PP | |||||||
2 | START | 168.3 | 5.2e-53 | 255 | 456 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++elvk+a+ +ep+W +ss+++ ++ + + + + +g+v+ ++ lve+l+d+ +W e+++ k +t+e is GSBRNA2T00116732001 255 ELAVSAMDELVKMAQTSEPLWIRSSKGKREMLNREEYD----------KKVGMVIINSLALVETLMDSE-RWAEMFPcmiaKNSTIEIIS 333 57899********************5555555555552..........4679*****************.******************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 sg ga+qlm+aelq+lsplvp R ++f+R+++q+ +g+w++vdvSvd +++ s ++R lpSg+l+++++ng+skvtw++h GSBRNA2T00116732001 334 SGmggtrnGAIQLMQAELQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRVSDRG-GSASAR---LPSGCLVHDMPNGYSKVTWIDH 419 ********************************************************98.788888...********************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h +r+lv+sgla+g k+wv++lqrqce+ GSBRNA2T00116732001 420 TEYDETNIHHSYRPLVSSGLAFGSKRWVSALQRQCES 456 ***********************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-21 | 89 | 161 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 92 | 161 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 101 | 161 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-20 | 102 | 165 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-19 | 104 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.53E-19 | 104 | 161 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 136 | 159 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.201 | 246 | 459 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.57E-28 | 249 | 457 | No hit | No description |
CDD | cd08875 | 3.83E-94 | 250 | 455 | No hit | No description |
SMART | SM00234 | 7.7E-42 | 255 | 456 | IPR002913 | START domain |
Pfam | PF01852 | 7.2E-46 | 256 | 456 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-21 | 486 | 700 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MNFSGFLHHD DDKTPGGESV GGGNHFFSPA AAMSGGPVQF SSPRLSLGLQ TNVENNGGEV 60 GRTGESFEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP LKKKKRYHRH TPHQIQELES 120 VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE 180 NMSVREAMRN PMCGHCGASA HQLRIENSRL KDELDRLCAL AGKFINRSDD AGSHQLPNST 240 LKLGVGVDEK SLYLELAVSA MDELVKMAQT SEPLWIRSSK GKREMLNREE YDKKVGMVII 300 NSLALVETLM DSERWAEMFP CMIAKNSTIE IISSGMGGTR NGAIQLMQAE LQLLSPLVPV 360 RQVTFLRFCK QHAEGVWAVV DVSVDRVSDR GGSASARLPS GCLVHDMPNG YSKVTWIDHT 420 EYDETNIHHS YRPLVSSGLA FGSKRWVSAL QRQCESLAIL MSSAIPNRSK PTPAISSIGK 480 KSMLRLAQRM TENFCRGVCA SSSQKWSKLD IGNIDEDVRI MTRKNVNDSG EPPGILLSAA 540 TSVWVPVTPR RLFDFLRDEL LRSEWDILSN GGPMQEIANI FKGQDHSNSV SLLRSTAMNA 600 SQSSMLILQE TSIDASGAVV VYAPVDIPAM HSVMNGGDSA YVALLPSGFA ILPDGQGTEE 660 TGSLLTVAFQ ILVNSLPTAK LNVESIETVS NLISCTVQKI RAALRCEK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22290 | 2e-80 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes forming at the base of young leaves, in endodermal cell lines around emergent lateral roots and in the epidermal layer of the stamen filament. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00116732001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013748124.1 | 0.0 | homeobox-leucine zipper protein HDG1-like isoform X1 | ||||
Refseq | XP_022574820.1 | 0.0 | homeobox-leucine zipper protein HDG1-like isoform X1 | ||||
Swissprot | Q9M2E8 | 0.0 | HDG1_ARATH; Homeobox-leucine zipper protein HDG1 | ||||
TrEMBL | A0A078G2K7 | 0.0 | A0A078G2K7_BRANA; BnaC04g04470D protein | ||||
STRING | Bra004934.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | homeodomain GLABROUS 1 |
Publications ? help Back to Top | |||
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