PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00116725001

Common Name

GSBRNA2T00116725001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 326aa MW: 34579.2 Da PI: 10.1796

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00116725001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.7e-37	58	145	2	90
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ + GSBRNA2T00116725001 58 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtlkipT-------- 139 57999***********************************************************888884442111111111........ PP TCP 83 snsssgka 90 +++++ GSBRNA2T00116725001 140 T--TNADS 145 1..11111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-30	63	143	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.327	64	118	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SLQVPSTSMS LAPPSRPPLK 60 RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEN AEPAIIAATG 120 TGTVPAIAMS VNGTLKIPTT TNADSDVGDN SAKKRRKRPS NSEYIDINEA VTVSVSSGLA 180 PISSGLAPIS SGLAPVTTVS QQTLPQGMIP MWAIPSNAVI PTVGAFFLVP HVAGPTNQPQ 240 MLAFPAAPPS SYVAAVQQAS LMARPPFVSV STPSVMAPSS SSGVTNRGSS SSTTNMLRDF 300 SLEIYEKQEL HQFMSTTTAR SSSNH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	156	KKRRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28123	0.0	microspore-derived embryo

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00116725001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189580	1e-136	AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143160.1	0.0	PREDICTED: transcription factor TCP9
Refseq	XP_013748133.1	0.0	transcription factor TCP9-like
Refseq	XP_022561503.1	0.0	transcription factor TCP9-like
Swissprot	O64647	1e-143	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A397Z796	0.0	A0A397Z796_BRACM; Uncharacterized protein
STRING	Bra004929.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-138	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]