PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00116650001 | ||||||||
Common Name | GSBRNA2T00116650001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 32325.2 Da PI: 9.1285 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 1.9e-18 | 161 | 215 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k GSBRNA2T00116650001 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 215 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.9 | 1.5e-39 | 161 | 250 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+ Lr + GSBRNA2T00116650001 161 RKKLRLSKEQALVLEETFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSGLR-A 249 69***********************************************************************************999.4 PP HD-ZIP_I/II 91 l 91 l GSBRNA2T00116650001 250 L 250 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.9E-31 | 1 | 121 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 142 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.98E-19 | 146 | 218 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.281 | 157 | 217 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-15 | 159 | 221 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.41E-15 | 161 | 218 | No hit | No description |
Pfam | PF00046 | 6.2E-16 | 161 | 215 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 192 | 215 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.1E-25 | 217 | 260 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-11 | 217 | 251 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGERDDGLAL SLSLGFSQPK EPSLRLNLMP STTSSSFPRM QNHKNKHLPK KTHHSSWPHL 60 FQPSGTTRIT AERNSNFGSF LRGFDVNRPP SVAVVVDLDE ETAGMSSPNS NVSSVSGNKR 120 DLAAAARGEG DETEGERASC SRGGGSCGSD DEDGGNGDGS RKKLRLSKEQ ALVLEETFKE 180 HSTLNPKQKL ALAKQLNLRT RQVEVWFQNR RARTKLKQTE VDCEYLKRCC DNLTEENRRL 240 QKEVSGLRAL KLSPNLYMQM TPPTTLTMCP SCERVSASSS TVAAPPPPPS SSSAH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 165 | SRKKLRL |
2 | 209 | 217 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00116650001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143078.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-4-like isoform X1 | ||||
Swissprot | P92953 | 1e-140 | ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4 | ||||
TrEMBL | A0A397ZDQ9 | 0.0 | A0A397ZDQ9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CKY8 | 0.0 | M4CKY8_BRARP; Uncharacterized protein | ||||
STRING | Bra004874.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 1e-112 | homeobox-leucine zipper protein 4 |
Publications ? help Back to Top | |||
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