PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116514001
Common NameGSBRNA2T00116514001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 206aa    MW: 23415.6 Da    PI: 9.6888
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116514001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.5e-1969124156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rrk+ ++tkeq + Lee F +n++++ +++ eLA+ l+L++rqV vWFqNrRa+ k
  GSBRNA2T00116514001  69 RRKKLRLTKEQSHLLEESFIQNHTLTSKQKLELATFLKLSQRQVEVWFQNRRARSK 124
                          79999*************************************************98 PP
2HD-ZIP_I/II108.64.6e-3570160192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+keq++lLEesF ++++L++++K ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr++ +lke+n+ L+keveeLr +
  GSBRNA2T00116514001  70 RKKLRLTKEQSHLLEESFIQNHTLTSKQKLELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRCFGSLKEQNRLLQKEVEELR-A 158
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 lk 92 
                          lk
  GSBRNA2T00116514001 159 LK 160
                          55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-1957125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-1758124IPR009057Homeodomain-like
SMARTSM003894.2E-1768130IPR001356Homeobox domain
PROSITE profilePS5007117.24869126IPR001356Homeobox domain
PfamPF000463.7E-1669124IPR001356Homeobox domain
CDDcd000861.50E-1569127No hitNo description
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
SMARTSM003405.6E-16126169IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-8126160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MALSPNSSSL ELSISLPSFS QLSSHPSSGK HMVRDLDINQ TPKTEDREWI MIAAAPHANE  60
EDSNSFGWRR KKLRLTKEQS HLLEESFIQN HTLTSKQKLE LATFLKLSQR QVEVWFQNRR  120
ARSKLKHTEM ECEYLKRCFG SLKEQNRLLQ KEVEELRALK AVPASILTMC PRCERATDAT  180
DNAVKEGTAP RSQSRRTISS SSSLC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116514001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1758371e-130AK175837.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-44-P21.
GenBankAK1759651e-130AK175965.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-65-O17.
GenBankEU3391861e-130EU339186.1 Arabidopsis thaliana HD-ZIP transcription factor 18 (ATHB18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127836.11e-149PREDICTED: homeobox-leucine zipper protein ATHB-X-like isoform X1
RefseqXP_013717412.11e-149homeobox-leucine zipper protein ATHB-X-like
RefseqXP_013741226.11e-149homeobox-leucine zipper protein ATHB-X-like
SwissprotQ8GXM78e-92ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A3P6ASF51e-148A0A3P6ASF5_BRACM; Uncharacterized protein
STRINGBra007952.1-P1e-148(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.12e-88homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]