PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00116507001

Common Name

GSBRNA2T00116507001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 197aa MW: 22324.3 Da PI: 8.9666

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00116507001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	38	81	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl GSBRNA2T00116507001 38 NFSKDEDDLILRLHALLGNR-WSLIAGRLP-GRTDTEIRIHWETYL 81 79****************.*****.**********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-15	20	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-20	28	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.575	31	85	IPR017930	Myb domain
SMART	SM00717	3.1E-14	35	83	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	38	81	IPR001005	SANT/Myb domain
CDD	cd00167	7.96E-12	38	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNIVCVRALY PPSRLLHRAE RCRVGGRNYE KPELKQSNFS KDEDDLILRL HALLGNRWSL 60 IAGRLPGRTD TEIRIHWETY LKRKLMKMGI DPTNHRLYHH ANYISRQYLN SSHKKLETDI 120 ISDQSSSVSE SCDMRMLPVS STNCYDSASS SAGHSRLPDL NISLIPAETV VSRPVCGLQE 180 SNSNGSTRQE TLLLFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-14	19	85	42	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10197	1e-112	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00116507001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN379105	0.0	JN379105.1 Brassica rapa subsp. oleifera myb-like transcription factor 2 (MYBL2-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018451742.1	1e-121	PREDICTED: transcription repressor MYB6-like
TrEMBL	A0A398AAP2	1e-140	A0A398AAP2_BRACM; Uncharacterized protein
STRING	Bo2g070770.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71030.1	4e-87	MYB-like 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]