PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116322001
Common NameGSBRNA2T00116322001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 312aa    MW: 34210.9 Da    PI: 9.627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116322001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-102270346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +W+ eE+  l  av+++G+g+W+tI +          R+  ++k++w++
  GSBRNA2T00116322001 22 KWSREEESALRSAVAKHGPGRWRTILKDPDfskvlFLRSNVDLKDKWRN 70
                         8*********************************956**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.16E-141773IPR009057Homeodomain-like
SMARTSM007173.1E-61974IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-131971IPR009057Homeodomain-like
PROSITE profilePS500907.9562072IPR017877Myb-like domain
CDDcd116601.72E-162171No hitNo description
PfamPF002492.7E-82170IPR001005SANT/Myb domain
SMARTSM005261.0E-9116187IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.121121192IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-13122201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-12127194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-7128185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVACREGINQ SYNIVMGAPK HKWSREEESA LRSAVAKHGP GRWRTILKDP DFSKVLFLRS  60
NVDLKDKWRN ISVMGYGSGS RPKPVKRTLG SLPSDEEILE MVDAKNFSTT GSSALQVSSP  120
RTPNWLDSLI TEAICTMKQP GGSSKTAIGN YIQERYEVPP NFKQLLSSKL KYLSSFGSGK  180
LIKVKRKYRI PNSTALSSHK KRHLGTLSDK KRVQNDEVSV QRQSEVDDAE LAKVTIVNIH  240
EAAAVAAQAV AEAEAAMVEA DEAAKQAEIA EAEAEAAQVF AEEVSKSLKG IKQLQCADDP  300
LLEVTERRGR S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.104950.0microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116322001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681083.10.0telomere repeat-binding factor 1-like isoform X1
RefseqXP_013681084.10.0telomere repeat-binding factor 1-like isoform X1
RefseqXP_022569299.10.0telomere repeat-binding factor 1-like isoform X1
RefseqXP_022569301.10.0telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK42e-82TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A3P6BMZ21e-172A0A3P6BMZ2_BRACM; Uncharacterized protein
STRINGBra014227.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2034156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-70telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]