PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116280001
Common NameGSBRNA2T00116280001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 798aa    MW: 90440.6 Da    PI: 4.3918
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-104274701053
                          HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                            +e L ++F++n  ps++ r  L+k+l+L+  +V+ WF+N R+
  GSBRNA2T00116280001 427 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPGKVSKWFKNTRY 470
                          67899*************************************97 PP
2PHD40.65.7e-14175230151
                          SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  GSBRNA2T00116280001 175 FCAECNSreASVDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKICDCK 230
                          6999**965555********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.79E-13167232IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.9E-12171230IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.03173230IPR019787Zinc finger, PHD-finger
CDDcd155043.09E-31175227No hitNo description
PfamPF006284.2E-11175230IPR019787Zinc finger, PHD-finger
SMARTSM002496.7E-10175228IPR001965Zinc finger, PHD-type
PROSITE patternPS013590176227IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.9E-11411469IPR009057Homeodomain-like
SuperFamilySSF466898.55E-10415480IPR009057Homeodomain-like
PROSITE profilePS5007112.341415475IPR001356Homeobox domain
SMARTSM003893.0E-10417479IPR001356Homeobox domain
CDDcd000861.35E-7418470No hitNo description
PfamPF000462.0E-7427470IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MEGKSKKVTE KACVSVERVE STLLSSLVKK KGKETTSKRK YNKRKTEEEI CSRGLEEEED  60
EGKKRRRRKS KIQQKSNKVE EVDEALRLQR RTRYLLIKMK MQQNLIDAYA AEGWKGQSRE  120
KIRPDKELER ARKHILDCKL GLRDAIRQLD LLSSVGRMEE KVMAPDGSIH HDHIFCAECN  180
SREASVDNDI ILCDGTCNRA FHQKCLDPPL ETESIPPGDQ GWFCKICDCK IEIIDTMNAQ  240
IGTQYPVDSN WQDIFNEEAN LPVGSEATLN KEADWPSDDS EDGDYDPEMK ERSNSRSDSG  300
GGGGDNDGGS SSTSVSLASD GVALSTGSWE GHEFGNAVES GEASHEETVH GPRQRKTVDY  360
TKLYHEMFGK DAVLQEQGSE DEDWGPSDRR KRRKESDAAS TVVTIERDPV SVGGKGGRRP  420
IFRIPRAAVE KLRQVFAENE LPSKSVRDSL SKELSLDPGK VSKWFKNTRY MALRNRKAES  480
VKQPEDSKVL LSGDSGPEAV MEKNTEADES HDNMEEIVME KTTETNEIQE TDDETVMETN  540
TDTNQIQETM EETVMEKNTE SNVIQETMDE AVMEKNTEAN ETQDTMDEAV MEERTEANEI  600
QRETMEETIM EKTTEAHEVQ DSMDDETNTE TNEIQETVDE AVLETNTETN EVQDTMDKSV  660
PLLFNDPTNQ TTVSPCHDDN NEEIQHANDY FPTPIEEENQ QYLEQKDSSL TLPPHEEVSS  720
EMSLETSLED NERKEVEEFE AVMEMLCRAE NKLLDVTQRL ERFRTPKGRK KLGKSSSCLH  780
EEDSVVYVPT PEIKDGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268KKRRRRK
26368KRRRRK
36570RRRKSK
4389394RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116280001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013685911.10.0pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0D3BM940.0A0A0D3BM94_BRAOL; Uncharacterized protein
STRINGBo3g175850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]