PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116151001
Common NameGSBRNA2T00116151001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 349aa    MW: 38682.6 Da    PI: 7.1249
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116151001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.27e-24157201145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+ep+rC+RtDGKkWRCsr +++++k+CErH h++r rsrk++e+
  GSBRNA2T00116151001 157 DMEPWRCKRTDGKKWRCSRSAVPDQKYCERHTHKSRPRSRKHVES 201
                          79****************************************997 PP
2QLQ44.54.6e-1690124236
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          aF+ aQ+q+L++Q  +y y++a++PvPpeLl + +
  GSBRNA2T00116151001  90 AFSEAQWQELERQRNIYEYIMASLPVPPELLTPFP 124
                          8******************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.3E-889125IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.9E-1190122IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.34690125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.08157201IPR014977WRC domain
PfamPF088791.8E-19158200IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMGTRAEHNK EDFVGCGFGF GVVEPSHREV MITSHHHHYP SYISPSSYSG SAGVTDPVFS  60
ASLAAADPFY TLSSSGEMGR SMSEKEGAAA FSEAQWQELE RQRNIYEYIM ASLPVPPELL  120
TPFPKHPSHT YHQDVAMAKG GSLKLGITSN ASNNAADMEP WRCKRTDGKK WRCSRSAVPD  180
QKYCERHTHK SRPRSRKHVE SSQHNDTRTT KNAASHYAGT YPQLYGQPVN PFSNDHREFR  240
WFMKEDDANA NLNPAVGPSR ELKRGFDYDL NFRQEEALVN QSFGALEGGG MEEAERRRNQ  300
QHQWVSHEGP SWLCYTAPGG PLAEALFLGA SNDPSASTTT SSCSRSSG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot tips and flowers. {ECO:0000269|PubMed:12974814}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116151001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1096193e-68AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBankAL1615613e-68AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBankATAC0023433e-68AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBankCP0026873e-68CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671506.10.0growth-regulating factor 8-like isoform X1
RefseqXP_013671507.10.0growth-regulating factor 8-like isoform X1
RefseqXP_013671510.10.0growth-regulating factor 8-like isoform X1
SwissprotQ9SU441e-125GRF8_ARATH; Growth-regulating factor 8
TrEMBLA0A0D3A5V00.0A0A0D3A5V0_BRAOL; Uncharacterized protein
STRINGBo1g037590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-111growth-regulating factor 8
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]