PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00115382001 | ||||||||
Common Name | GSBRNA2T00115382001, LOC106411322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 415aa MW: 47015.7 Da PI: 6.4199 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.6e-51 | 53 | 178 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ GSBRNA2T00115382001 53 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 141 79***************************.89***************888889************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + s++++ +glkktLvfy+g+apkg++t+W+m+eyrl GSBRNA2T00115382001 142 IRSETSRPIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 178 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-56 | 52 | 199 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.272 | 52 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-25 | 54 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MAIVSSTTSI TTMSNQVDNN NEKDIEEDTH GGAHESRVQN DDEADDHDHD MVMPGFRFHP 60 TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAM AAIGEKEWYF YVPRDRKYRN 120 GDRPNRVTTS GYWKATGADR MIRSETSRPI GLKKTLVFYS GKAPKGTRTS WIMNEYRLPH 180 HETEKYQKAE ISLCRVYKRP GVEDHPSAPR SLSTRHHNQI SSSTSSRLAL RQQQQHHSSS 240 SNHSDNNLNN NNNISHNLDR LSTEYSGDGS TTTTTNSNSD VTIALANQNI YRPMPYGASN 300 TPIVSTTNQE DDETAIVDDL QRLVNYQISD GVNINHQYYQ IAQQFHNQQL SANANALQLV 360 AAATTAALTP QTQAALAMNM IPAGTIPNNA LWDMWNPIVP DHGNKNHYTD SPFK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 43 | 199 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 43 | 199 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 43 | 199 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 43 | 199 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-57 | 43 | 199 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 43 | 199 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00115382001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT000874 | 0.0 | BT000874.1 Arabidopsis thaliana clone C104984 putative NAM (no apical meristem) protein (At2g02450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593565.1 | 0.0 | PREDICTED: NAC domain-containing protein 19-like | ||||
Refseq | XP_013707518.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A0D3DAD9 | 0.0 | A0A0D3DAD9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EY46 | 0.0 | A0A3P6EY46_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g080470.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.2 | 0.0 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106411322 |
Publications ? help Back to Top | |||
---|---|---|---|
|