PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114798001
Common NameGSBRNA2T00114798001, LOC106380775
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 344aa    MW: 39308.5 Da    PI: 4.5098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114798001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.8e-1919111197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l ++d +++ + ++p + +++++ +  +s++++l+ ++g sW+vk+  +k+++  y+  +GW +Fv++n L e++ ++F+++++++
  GSBRNA2T00114798001  19 FFKILRREDLSSQLIRMIPHDIIRSISDD-SSSFKMVLKVPWGSSWTVKI--SKNPSFhYMEDDGWTQFVNDNALGENEYLTFTHERNMR 105
                          99***********999**********766.5899****************..99999957777*********************999999 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v ++
  GSBRNA2T00114798001 106 F--NVNIY 111
                          9..66665 PP
2B336.96.6e-122212981699
                          EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l +pk f+e h+ kk+  k  +++ e   sW+v +    ++ +  +++GW++  ++ gL  gDf++Fkl++   +e++vkv r+
  GSBRNA2T00114798001 221 LGVPKVFVEMHMPKKT--KWFKIRPEGKDSWDVLF--LVTDTQSRFSAGWSRLSRELGLVIGDFCTFKLIK--PTEMLVKVSRH 298
                          679********86655..5688889999*******..555555569**********************987..77789999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1814115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-2015118IPR015300DNA-binding pseudobarrel domain
CDDcd100176.17E-1417111No hitNo description
PfamPF023623.5E-1619110IPR003340B3 DNA binding domain
SMARTSM010197.4E-2219114IPR003340B3 DNA binding domain
PROSITE profilePS5086312.92919114IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-18206297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-15206297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.673206299IPR003340B3 DNA binding domain
CDDcd100176.37E-12207293No hitNo description
SMARTSM010193.2E-14209299IPR003340B3 DNA binding domain
PfamPF023623.1E-8220297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVRNGGFGQI MEEGDSPGFF KILRREDLSS QLIRMIPHDI IRSISDDSSS FKMVLKVPWG  60
SSWTVKISKN PSFHYMEDDG WTQFVNDNAL GENEYLTFTH ERNMRFNVNI YEPDGTEMLK  120
PRESATIASS SGMNKREQRE GVYKHVKEEI VSSSESSYHS LKNAQGKKQE LNLGKKKAEE  180
SKKNKKSMKK KKKVDSDLEE GTSSLVPEFS ITIRKSHLVF LGVPKVFVEM HMPKKTKWFK  240
IRPEGKDSWD VLFLVTDTQS RFSAGWSRLS RELGLVIGDF CTFKLIKPTE MLVKVSRHGD  300
DDDEDDIEED DDNDEEEAED ADDDDSDDED AEDDDDDADE SED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192KKKAEESKKNKKSMKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.98010.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114798001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676060.10.0B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-132Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLA0A3P6CLR20.0A0A3P6CLR2_BRAOL; Uncharacterized protein
STRINGXP_006400343.11e-147(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-121VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]