PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00114236001

Common Name

GSBRNA2T00114236001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 836aa MW: 91645.1 Da PI: 6.4184

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00114236001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ GSBRNA2T00114236001 18 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP
2	START	165.6	3.4e-52	162	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g GSBRNA2T00114236001 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngG 250 7899****************************************************.7777777777*************9999 PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-.TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvds.eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 +++l +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s +++pp +++vRae+lpSg+li+p+++g+s +++v+h+dl++ ++ GSBRNA2T00114236001 251 TIELLYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSgPSMPP-VQHFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSV 339 ****************************************98456666.8********************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqce 205 +++lr+l++s + ++kt++a+l+++++ GSBRNA2T00114236001 340 PEVLRPLYESPKVLAQKTTMAALRQLKQ 367 **********************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.24	13	77	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-16	18	81	IPR009057	Homeodomain-like
CDD	cd00086	1.31E-16	18	78	No hit	No description
Pfam	PF00046	5.8E-16	19	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	20	76	IPR009057	Homeodomain-like
CDD	cd14686	1.14E-6	70	109	No hit	No description
PROSITE profile	PS50848	24.285	152	377	IPR002913	START domain
CDD	cd08875	2.62E-74	156	369	No hit	No description
SMART	SM00234	1.7E-38	161	368	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.4E-22	161	344	IPR023393	START-like domain
SuperFamily	SSF55961	9.61E-37	161	370	No hit	No description
Pfam	PF01852	1.1E-49	162	367	IPR002913	START domain
Pfam	PF08670	7.1E-52	692	834	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence Send to blast
MAMSYKDGGK MGCMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVHENSYFRQ 120 HTPNPTLPAK DTSCESVVTS GQHQLASQNP PRDASPAGLL SIAEETLAEF LSKATGTAVE 180 WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV 240 MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP 300 VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA 360 ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWSVIGDSMD 420 DVTITVNSSP DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNIDAYLAA AVKVGPCSAR VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP 540 RDIFLLQLCS GMDENALGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKEASSPNRT 600 LDLASALEIG PAGTTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARNYVRGII 660 ASVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRCYMGVELL KLNSEGNESI 720 LKNLWHHTDA IICCSMKAMP VFTFANQAGL DMLETTLVSL QDITLEKIFD DSGRKTLCSE 780 FPQIMQQGFG SLQGGICISS MGRPVSYERA VAWKVLNEEE NAHCICFVFI NWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence Send to blast

MAMSYKDGGK MGCMDNGKYV RYTPEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ LVHENSYFRQ  120
HTPNPTLPAK DTSCESVVTS GQHQLASQNP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PDSIGIIAIS HGCAGVAARA CGLVGLEPTR VAEIVKDRPS WFRECRAVDV  240
MNVLPTANGG TIELLYMQLY APTTLAPPRD FWLLRYTSVL EDGSLVVCER SLKSGPSMPP  300
VQHFVRAEML PSGYLIRPCD GGGSIIHIVD HMDLEACSVP EVLRPLYESP KVLAQKTTMA  360
ALRQLKQIAQ ESSQTNSSVN GWGRRPAALR ALSQRLSRGF NEAVNGFTDE GWSVIGDSMD  420
DVTITVNSSP DKLMGLNLTF SNGFAPVSNV VLCAKASMLL QNVPPAILLR FLREHRSEWA  480
DNNIDAYLAA AVKVGPCSAR VGGFGGQVIL PLAHTIEHEE FMEVIKLEGL GHSPEDAIVP  540
RDIFLLQLCS GMDENALGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS TKEASSPNRT  600
LDLASALEIG PAGTTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARNYVRGII  660
ASVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRCYMGVELL KLNSEGNESI  720
LKNLWHHTDA IICCSMKAMP VFTFANQAGL DMLETTLVSL QDITLEKIFD DSGRKTLCSE  780
FPQIMQQGFG SLQGGICISS MGRPVSYERA VAWKVLNEEE NAHCICFVFI NWSFV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26301	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00114236001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ439449	0.0	AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBank	AY060556	0.0	AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009107148.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A3P6BJ51	0.0	A0A3P6BJ51_BRACM; Uncharacterized protein
STRING	Bra014315.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]