PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00114188001
Common NameGSBRNA2T00114188001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 171aa    MW: 18656.1 Da    PI: 10.0739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00114188001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192474256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++aa+++++g+
  GSBRNA2T00114188001 24 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAQQAARAYDAAAREFRGA 74
                         59*******.**********843...6*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-222483IPR016177DNA-binding domain
CDDcd000182.28E-202483No hitNo description
PROSITE profilePS5103224.3422481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-322482IPR001471AP2/ERF domain
PfamPF008479.6E-142473IPR001471AP2/ERF domain
SMARTSM003802.0E-362487IPR001471AP2/ERF domain
PRINTSPR003673.1E-112536IPR001471AP2/ERF domain
PRINTSPR003673.1E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MIIMTKMGFK PDPNPIQGNA KEIRYRGVRK RPWGRYAAEI RDPRKKTRVW LGTFDTAQQA  60
ARAYDAAARE FRGAKAKTNF PTSLELNVND GGYSRSPSQS STVDSASPTA ARLIPLARHV  120
YFFNMTAFPL AATCGVQSES DSSSVVDFEG GAEKKSQPLD LDLNLAPPAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-221991980Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.108681e-157microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00114188001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4997161e-103AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107000.13e-99PREDICTED: ethylene-responsive transcription factor 8
SwissprotQ9MAI52e-59ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLM4EQ867e-98M4EQ86_BRARP; Uncharacterized protein
STRINGBra030957.1-P1e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.11e-44ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  5. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]