PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00114181001 | ||||||||
Common Name | GSBRNA2T00114181001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 345aa MW: 37474.2 Da PI: 7.2539 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.4 | 3.1e-35 | 53 | 185 | 2 | 120 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssa 82 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+ +ak ai+ l+++ + +a GSBRNA2T00114181001 53 TGKKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGLDRPSKAVDWLIMKAKSAIDNLAELppwnpadttR------------QAAA 130 79**************************************************************5433333220............2222 PP TCP 83 snsssg................kaaksaakskksqksaasalnlak..esrakara 120 ++++ + ++ + +++s++ ++s + + +++ +sra+a++ GSBRNA2T00114181001 131 NKPKRPktvipppetgihggsgEETERHHQSSFLPASVS-TPHYHPppSSRANAQS 185 212222334455555555655433333333333333333.2222221244444433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-30 | 53 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.545 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MADEESNHHH SIHSPSSPHP LGMRHQSVFS TAAEHGGCGE IVEVEGGHIV RSTGKKDRHS 60 KVCTAKGPRD RRVRLSAPTA IQFYDVQDRL GLDRPSKAVD WLIMKAKSAI DNLAELPPWN 120 PADTTRQAAA NKPKRPKTVI PPPETGIHGG SGEETERHHQ SSFLPASVST PHYHPPPSSR 180 ANAQSQDLRL SLHSFQNGPA FADETEHALF SGQSNPLVFD SSTASCDQSP EFGKMQRLVT 240 WNNGGAADSA AFGGGGFVFA SPATTTSFQP QSQVFSQRGP LQSINTPMPP RAWFDPYHDH 300 HHNHHHHPYH ISPAIHQSAI PARYLSEEDG HGDKPSSASS DSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 60 | 113 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 60 | 113 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 138 | PKRPKTV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00114181001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009106990.1 | 0.0 | PREDICTED: transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-120 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A291I301 | 0.0 | A0A291I301_BRARR; TCP3 | ||||
STRING | Bra030952.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-94 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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