PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00113687001 | ||||||||
Common Name | GSBRNA2T00113687001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 450aa MW: 50264.2 Da PI: 6.0803 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.4 | 1.2e-08 | 297 | 334 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + GSBRNA2T00113687001 297 FEHflHPYPKDSDKIMLARQTGLSRGQVSNWFINARVR 334 554459******************************88 PP | |||||||
2 | BELL | 125.8 | 1.7e-40 | 159 | 230 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag ++akpYt+lAl++iSrhFrcL+dai++qi GSBRNA2T00113687001 159 ERQELQNKLSKLLSILDEVDRRYKQYYHQMQIVVSSFDVIAGSEAAKPYTALALQTISRHFRCLRDAISGQI 230 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.0E-65 | 99 | 228 | IPR006563 | POX domain |
Pfam | PF07526 | 8.8E-47 | 106 | 227 | IPR006563 | POX domain |
Gene3D | G3DSA:1.20.5.350 | 4.2E-4 | 115 | 179 | No hit | No description |
PROSITE profile | PS50071 | 11.531 | 275 | 338 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-11 | 278 | 339 | No hit | No description |
SMART | SM00389 | 7.0E-9 | 278 | 342 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-17 | 279 | 345 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 281 | 344 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.2E-18 | 295 | 334 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MATYYKSSGS SGIYSEFVPG NAMIYTNPAV SYFPGEANNV SASKEIQVLS SYGEEASHVV 60 EIQDSRSWRD QEDRACFPVM MRPTTGQGLS LGISSQIETQ VVSGFHNSKY LEAAQELLDE 120 AVNVKKALKQ FQPEGDKTEE DKEKNLQESI TNPDLPQAER QELQNKLSKL LSILDEVDRR 180 YKQYYHQMQI VVSSFDVIAG SEAAKPYTAL ALQTISRHFR CLRDAISGQI LVIRRSLGGE 240 HDGLDGRGVG ISRLRNVDQK VRQQRALQRL GVVQPHAWRP QRGLPDSSVL ILRAWLFEHF 300 LHPYPKDSDK IMLARQTGLS RGQVSNWFIN ARVRLWKPMV EEMYKEEFTD ALEENVTNLS 360 SGNNRPETTE SQEQQLVSSS NNGGASTSTV ARGGEDRLMM VTEMTRNGSG GMSLTLGIPD 420 NYENSFQYLN SGNGQHRLGS SQLLQDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-15 | 284 | 342 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-15 | 284 | 342 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5108 | 0.0 | leaf| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00113687001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232504 | 0.0 | AC232504.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057N22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736834.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_013736835.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 0.0 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A3P6AE67 | 0.0 | A0A3P6AE67_BRACM; Uncharacterized protein | ||||
STRING | Bra013076.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2869 | 25 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 0.0 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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