PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00113594001 | ||||||||
Common Name | GSBRNA2T00113594001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27438.3 Da PI: 9.871 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.7 | 9.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva++ifss+gkl+eys+ GSBRNA2T00113594001 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 102.7 | 4.9e-34 | 78 | 174 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 ++ + + +++e++ e+akLk+++e L++++R+++GedL+sLslkeLq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq++n+a GSBRNA2T00113594001 78 KQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKALQDHNNA 167 56666778899******************************************************************************* PP K-box 94 Lrkklee 100 L kk++e GSBRNA2T00113594001 168 LLKKIKE 174 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.562 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.59E-39 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.3E-28 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.719 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSS KGKLFEYSTD 60 SCMERILERY DRYLYSDKQL VGRDISQSEN WVLEHAKLKA RVEVLEKNKR NFMGEDLDSL 120 SLKELQSLEH QLHAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNALLK KIKEREKNTV 180 QQEGQLIQCS NNSSILQPQY CLTSSRDGFV GRVGGDDGGA SSLAEPNSLL PAWMLRLATN 240 E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
5f28_B | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
5f28_C | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
5f28_D | 3e-22 | 1 | 90 | 1 | 89 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.23911 | 0.0 | vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in apical meristems in transition to flowering. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00113594001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ505842 | 0.0 | AJ505842.1 Brassica oleracea var. botrytis mRNA for MADS-box protein FUL-b. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136412.1 | 1e-177 | PREDICTED: agamous-like MADS-box protein AGL8 homolog | ||||
Swissprot | Q41274 | 1e-170 | AGL8_SINAL; Agamous-like MADS-box protein AGL8 homolog | ||||
TrEMBL | A0A398A3E6 | 1e-176 | A0A398A3E6_BRACM; Uncharacterized protein | ||||
STRING | Bra012997.1-P | 1e-176 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-155 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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