PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00113484001
Common NameGSBRNA2T00113484001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 242aa    MW: 26557 Da    PI: 6.7317
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00113484001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.8e-302103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++
  GSBRNA2T00113484001   2 SCNGCRVLRKGCSETCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNW 91 
                          6*********************9998777889********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                           ++q+++e++l+
  GSBRNA2T00113484001  92 SVCQAAVETVLR 103
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1271107IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSVCQAAVET VLRGGSLKPI PELLTRDGGF  120
PSPTSDEASE ICMEMMNDSG DRDVYYHHSR FSSSRSRATA SPPKRRRLAS EQQQERPSSE  180
LDFSLIPTFP VKTTPFKEET RRPETPYSEE SVTTAPFLDN IASERFVRGG GETTKLLNLF  240
A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163167KRRRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00113484001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857611e-103AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639931.11e-179LOB domain-containing protein 38-like
RefseqXP_013741240.11e-179LOB domain-containing protein 38-like
SwissprotQ9SN231e-128LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A398AAY41e-177A0A398AAY4_BRACM; Uncharacterized protein
STRINGBra012913.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-120LOB domain-containing protein 38
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]